{ "type": "genome", "identifier": "GCF_007860095.1", "organism": "Novipirellula galeiformis", "title": "Novipirellula galeiformis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Radboud Universiteit Nijmegen", "publication": [ {} ], "properties": { "assembly_accession": "GCF_007860095.1", "bioproject": "PRJNA224116", "biosample": "SAMN10954024", "wgs_master": "SJPT00000000.1", "refseq_category": "reference genome", "taxid": "2528004", "species_taxid": "2528004", "organism_name": "Novipirellula galeiformis", "infraspecific_name": "strain=Pla52o", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/08/07", "asm_name": "ASM786009v1", "asm_submitter": "Radboud Universiteit Nijmegen", "gbrs_paired_asm": "GCA_007860095.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/860/095/GCF_007860095.1_ASM786009v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7403604", "genome_size_ungapped": "7402604", "gc_percent": "56.000000", "replicon_count": "0", "scaffold_count": "30", "contig_count": "30", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_007860095.1-RS_2024_10_11", "annotation_date": "2024-10-11", "total_gene_count": "5356", "protein_coding_gene_count": "5272", "non_coding_gene_count": "54", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-08-07", "dateModified": "2019-08-07", "datePublished": "2019-08-07", "_annotation": { "sample_count": 1, "sample_organism": [ "Novipirellula galeiformis" ], "sample_taxid": [ "2528004" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany: Heiligendamm" ], "sample_host_location_id": [], "data_size": "2.089 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7403604", "Number of Sequences": "30", "Longest Sequences (bp)": "1407854", "N50 (bp)": "834372", "Gap Ratio (%)": "0.013507", "GCcontent (%)": "55.8", "Number of CDSs": "5402", "Average Protein Length": "372.8", "Coding Ratio (%)": "81.6", "Number of rRNAs": "4", "Number of tRNAs": "51", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Novipirellula galeiformis", "strain": "strain=Pla52o", "accession": "GCA_007860095.1", "taxid": 2528004, "species_taxid": 2528004, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2453, "total_fragments": 2457, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Rhodopirellula maiorica", "strain": "strain=SM1", "accession": "GCA_000346295.1", "taxid": 1265734, "species_taxid": 1265734, "relation_to_type": "type", "validated": true, "ani": 79.4997, "matched_fragments": 798, "total_fragments": 2457, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodopirellula aestuarii", "strain": "strain=ICT_H3.1", "accession": "GCA_023701485.1", "taxid": 2950107, "species_taxid": 2950107, "relation_to_type": "type", "validated": true, "ani": 77.0609, "matched_fragments": 179, "total_fragments": 2457, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novipirellula aureliae", "strain": "strain=Q31b", "accession": "GCA_007860185.1", "taxid": 2527966, "species_taxid": 2527966, "relation_to_type": "type", "validated": true, "ani": 77.0267, "matched_fragments": 179, "total_fragments": 2457, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodopirellula europaea", "strain": "strain=6C", "accession": "GCA_000338295.1", "taxid": 1263866, "species_taxid": 1263866, "relation_to_type": "type", "validated": true, "ani": 76.7701, "matched_fragments": 176, "total_fragments": 2457, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novipirellula artificiosorum", "strain": "strain=Poly41", "accession": "GCA_007860135.1", "taxid": 2528016, "species_taxid": 2528016, "relation_to_type": "type", "validated": true, "ani": 76.6625, "matched_fragments": 254, "total_fragments": 2457, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodopirellula pilleata", "strain": "strain=Pla100", "accession": "GCA_007859915.1", "taxid": 2714738, "species_taxid": 2714738, "relation_to_type": "type", "validated": true, "ani": 76.6022, "matched_fragments": 181, "total_fragments": 2457, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rubripirellula amarantea", "strain": "strain=Pla22", "accession": "GCA_007859865.1", "taxid": 2527999, "species_taxid": 2527999, "relation_to_type": "type", "validated": true, "ani": 76.5569, "matched_fragments": 158, "total_fragments": 2457, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rosistilla carotiformis", "strain": "strain=Poly24", "accession": "GCA_007753095.1", "taxid": 2528017, "species_taxid": 2528017, "relation_to_type": "type", "validated": true, "ani": 76.5373, "matched_fragments": 139, "total_fragments": 2457, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodopirellula sallentina", "strain": "strain=SM41", "accession": "GCA_000346505.1", "taxid": 1263869, "species_taxid": 1263869, "relation_to_type": "type", "validated": true, "ani": 76.4574, "matched_fragments": 146, "total_fragments": 2457, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Crateriforma conspicua", "strain": "strain=Mal65", 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