{ "type": "genome", "identifier": "GCF_007860125.1", "organism": "Rubripirellula tenax", "title": "Rubripirellula tenax", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Radboud Universiteit Nijmegen", "publication": [ {} ], "properties": { "assembly_accession": "GCF_007860125.1", "bioproject": "PRJNA224116", "biosample": "SAMN10954035", "wgs_master": "SJPW00000000.1", "refseq_category": "reference genome", "taxid": "2528015", "species_taxid": "2528015", "organism_name": "Rubripirellula tenax", "infraspecific_name": "strain=Poly51", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/08/07", "asm_name": "ASM786012v1", "asm_submitter": "Radboud Universiteit Nijmegen", "gbrs_paired_asm": "GCA_007860125.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/860/125/GCF_007860125.1_ASM786012v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7988747", "genome_size_ungapped": "7986247", "gc_percent": "56.000000", "replicon_count": "0", "scaffold_count": "42", "contig_count": "42", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_007860125.1-RS_2024_10_11", "annotation_date": "2024-10-11", "total_gene_count": "6129", "protein_coding_gene_count": "5949", "non_coding_gene_count": "110", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-08-07", "dateModified": "2019-08-07", "datePublished": "2019-08-07", "_annotation": { "sample_count": 1, "sample_organism": [ "Rubripirellula tenax" ], "sample_taxid": [ "2528015" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany: Heiligendamm" ], "sample_host_location_id": [], "data_size": "2.242 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7988747", "Number of Sequences": "42", "Longest Sequences (bp)": "1524178", "N50 (bp)": "1071311", "Gap Ratio (%)": "0.031895", "GCcontent (%)": "56.2", "Number of CDSs": "6092", "Average Protein Length": "377.3", "Coding Ratio (%)": "86.3", "Number of rRNAs": "3", "Number of tRNAs": "119", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Rubripirellula tenax", "strain": "strain=Poly51", "accession": "GCA_007860125.1", "taxid": 2528015, "species_taxid": 2528015, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2638, "total_fragments": 2639, 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