{ "type": "genome", "identifier": "GCF_007860135.1", "organism": "Novipirellula artificiosorum", "title": "Novipirellula artificiosorum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Radboud Universiteit Nijmegen", "publication": [ {} ], "properties": { "assembly_accession": "GCF_007860135.1", "bioproject": "PRJNA224116", "biosample": "SAMN10954036", "wgs_master": "SJPV00000000.1", "refseq_category": "reference genome", "taxid": "2528016", "species_taxid": "2528016", "organism_name": "Novipirellula artificiosorum", "infraspecific_name": "strain=Poly41", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/08/07", "asm_name": "ASM786013v1", "asm_submitter": "Radboud Universiteit Nijmegen", "gbrs_paired_asm": "GCA_007860135.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/860/135/GCF_007860135.1_ASM786013v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "9199719", "genome_size_ungapped": "9197319", "gc_percent": "55.500000", "replicon_count": "0", "scaffold_count": "66", "contig_count": "66", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_007860135.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "6869", "protein_coding_gene_count": "6724", "non_coding_gene_count": "79", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-08-07", "dateModified": "2019-08-07", "datePublished": "2019-08-07", "_annotation": { "sample_count": 1, "sample_organism": [ "Novipirellula artificiosorum" ], "sample_taxid": [ "2528016" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany: Heiligendamm" ], "sample_host_location_id": [], "data_size": "2.607 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 2.78, "strain_heterogeneity": 50.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "9199719", "Number of Sequences": "66", "Longest Sequences (bp)": "1637078", "N50 (bp)": "506126", "Gap Ratio (%)": "0.026196", "GCcontent (%)": "55.3", "Number of CDSs": "6886", "Average Protein Length": "382.2", "Coding Ratio (%)": "85.8", "Number of rRNAs": "3", "Number of tRNAs": "75", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Novipirellula artificiosorum", "strain": "strain=Poly41", "accession": "GCA_007860135.1", "taxid": 2528016, "species_taxid": 2528016, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 3028, "total_fragments": 3031, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Novipirellula aureliae", "strain": "strain=Q31b", "accession": "GCA_007860185.1", "taxid": 2527966, "species_taxid": 2527966, "relation_to_type": "type", "validated": true, "ani": 78.1051, "matched_fragments": 326, "total_fragments": 3031, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodopirellula pilleata", "strain": "strain=Pla100", "accession": "GCA_007859915.1", "taxid": 2714738, "species_taxid": 2714738, "relation_to_type": "type", "validated": true, "ani": 77.3136, "matched_fragments": 174, "total_fragments": 3031, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rubripirellula obstinata", "strain": "strain=CECT 8602", "accession": "GCA_001642955.1", "taxid": 406547, "species_taxid": 406547, "relation_to_type": "type", "validated": true, "ani": 77.0399, "matched_fragments": 147, "total_fragments": 3031, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rubripirellula obstinata", "strain": "strain=LF1", "accession": "GCA_008374075.1", "taxid": 406547, "species_taxid": 406547, "relation_to_type": "type", "validated": true, "ani": 76.9443, "matched_fragments": 155, "total_fragments": 3031, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodopirellula maiorica", "strain": "strain=SM1", "accession": "GCA_000346295.1", "taxid": 1265734, "species_taxid": 1265734, "relation_to_type": "type", "validated": true, "ani": 76.814, "matched_fragments": 265, "total_fragments": 3031, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodopirellula bahusiensis", "strain": "strain=SWK21", "accession": "GCA_002727185.1", "taxid": 2014065, "species_taxid": 2014065, "relation_to_type": "type", "validated": true, "ani": 76.735, "matched_fragments": 154, "total_fragments": 3031, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novipirellula galeiformis", "strain": "strain=Pla52o", "accession": "GCA_007860095.1", "taxid": 2528004, "species_taxid": 2528004, "relation_to_type": "type", "validated": true, "ani": 76.6502, "matched_fragments": 261, "total_fragments": 3031, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Crateriforma conspicua", "strain": "strain=Mal65", "accession": "GCA_007752935.1", "taxid": 2527996, "species_taxid": 2527996, "relation_to_type": "type", "validated": true, "ani": 76.6327, "matched_fragments": 158, "total_fragments": 3031, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stieleria neptunia", "strain": "strain=Enr13", "accession": "GCA_007754155.1", "taxid": 2527979, "species_taxid": 2527979, "relation_to_type": "type", "validated": true, "ani": 76.6002, "matched_fragments": 206, "total_fragments": 3031, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodopirellula europaea", "strain": "strain=6C", "accession": "GCA_000338295.1", "taxid": 1263866, "species_taxid": 1263866, "relation_to_type": "type", "validated": true, "ani": 76.5418, "matched_fragments": 152, "total_fragments": 3031, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rubripirellula lacrimiformis", "strain": "strain=K22.7", "accession": "GCA_007741535.1", "taxid": 1930273, "species_taxid": 1930273, "relation_to_type": "type", "validated": true, "ani": 76.4528, "matched_fragments": 188, "total_fragments": 3031, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseiconus nitratireducens", "strain": "strain=JC645", "accession": "GCA_008629675.1", "taxid": 2605748, "species_taxid": 2605748, "relation_to_type": "type", "validated": true, "ani": 76.0812, "matched_fragments": 144, "total_fragments": 3031, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 2.78, "strain_heterogeneity": 50.0 }, "gtdb_result": 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