{ "type": "genome", "identifier": "GCF_007923355.1", "organism": "Phaeobacter marinintestinus", "title": "Phaeobacter marinintestinus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Shandong University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_007923355.1", "bioproject": "PRJNA224116", "biosample": "SAMN12305640", "wgs_master": "VOGO00000000.1", "refseq_category": "reference genome", "taxid": "1492905", "species_taxid": "1492905", "organism_name": "Phaeobacter marinintestinus", "infraspecific_name": "strain=UB-M7", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/08/09", "asm_name": "ASM792335v1", "asm_submitter": "Shandong University", "gbrs_paired_asm": "GCA_007923355.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/923/355/GCF_007923355.1_ASM792335v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4943538", "genome_size_ungapped": "4943538", "gc_percent": "58.500000", "replicon_count": "0", "scaffold_count": "64", "contig_count": "64", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_007923355.1-RS_2024_05_04", "annotation_date": "2024-05-04", "total_gene_count": "4723", "protein_coding_gene_count": "4596", "non_coding_gene_count": "51", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-08-09", "dateModified": "2019-08-09", "datePublished": "2019-08-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Phaeobacter marinintestinus" ], "sample_taxid": [ "1492905" ], "sample_host_organism": [ "sea cucumber" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "1.392 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4943538", "Number of Sequences": "64", "Longest Sequences (bp)": "862929", "N50 (bp)": "349847", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "58.7", "Number of CDSs": "4713", "Average Protein Length": "313.1", "Coding Ratio (%)": "89.6", "Number of rRNAs": "3", "Number of tRNAs": "47", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Phaeobacter marinintestinus", "strain": "strain=UB-M7", "accession": "GCA_007923355.1", "taxid": 1492905, "species_taxid": 1492905, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1618, "total_fragments": 1618, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Ruegeria intermedia", "strain": "strain=DSM 29341", "accession": "GCA_900129345.1", "taxid": 996115, "species_taxid": 996115, "relation_to_type": "type", "validated": true, "ani": 78.238, "matched_fragments": 467, "total_fragments": 1618, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Falsiruegeria litorea", "strain": "strain=CECT 7639", "accession": "GCA_900172225.1", "taxid": 1280831, "species_taxid": 1280831, "relation_to_type": "type", "validated": true, "ani": 78.1269, "matched_fragments": 477, "total_fragments": 1618, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Antarcticimicrobium luteum", "strain": "strain=318-1", "accession": "GCA_004358185.1", "taxid": 2547397, "species_taxid": 2547397, "relation_to_type": "type", "validated": true, "ani": 78.1138, "matched_fragments": 526, "total_fragments": 1618, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruegeria marisrubri", "strain": "strain=ZGT118", "accession": "GCA_001507595.1", "taxid": 1685379, "species_taxid": 1685379, "relation_to_type": "type", "validated": true, "ani": 78.1055, "matched_fragments": 498, "total_fragments": 1618, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Falsiruegeria mediterranea", "strain": "strain=CECT 7615", "accession": "GCA_900302455.1", "taxid": 1280832, "species_taxid": 1280832, "relation_to_type": "type", "validated": true, "ani": 78.0047, "matched_fragments": 487, "total_fragments": 1618, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leisingera aquaemixtae", "strain": "strain=CECT 8399", "accession": "GCA_001458395.1", "taxid": 1396826, "species_taxid": 1396826, "relation_to_type": "type", "validated": true, "ani": 77.958, "matched_fragments": 415, "total_fragments": 1618, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruegeria meonggei", "strain": "strain=CECT 8411", "accession": "GCA_900172215.1", "taxid": 1446476, "species_taxid": 1446476, "relation_to_type": "type", "validated": true, "ani": 77.9409, "matched_fragments": 386, "total_fragments": 1618, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruegeria denitrificans", "strain": "strain=CECT 5091", "accession": "GCA_001458295.1", "taxid": 1715692, "species_taxid": 1715692, "relation_to_type": "type", "validated": true, "ani": 77.8068, "matched_fragments": 395, "total_fragments": 1618, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leisingera daeponensis", "strain": "strain=DSM 23529", "accession": "GCA_000473145.1", "taxid": 405746, "species_taxid": 405746, "relation_to_type": "type", "validated": true, "ani": 77.8042, "matched_fragments": 406, "total_fragments": 1618, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruegeria atlantica", "strain": "strain=CECT 4292", "accession": "GCA_001458195.1", "taxid": 81569, "species_taxid": 81569, "relation_to_type": "suspected-type", "validated": true, "ani": 77.7609, "matched_fragments": 386, "total_fragments": 1618, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruegeria faecimaris", "strain": "strain=DSM 28009", "accession": "GCA_900182615.1", "taxid": 686389, "species_taxid": 686389, "relation_to_type": "type", "validated": true, "ani": 77.7479, "matched_fragments": 324, "total_fragments": 1618, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cribrihabitans marinus", "strain": "strain=DSM 29340", "accession": "GCA_900109035.1", "taxid": 1227549, "species_taxid": 1227549, "relation_to_type": "type", "validated": true, "ani": 77.6888, "matched_fragments": 453, "total_fragments": 1618, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cribrihabitans marinus", "strain": "strain=CGMCC 1.13219", "accession": "GCA_014640375.1", "taxid": 1227549, "species_taxid": 1227549, "relation_to_type": "type", "validated": true, "ani": 77.688, "matched_fragments": 457, "total_fragments": 1618, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoprimorskyibacter insulae", "strain": "strain=CECT 8871", "accession": "GCA_900302505.1", "taxid": 1695997, "species_taxid": 1695997, "relation_to_type": "type", "validated": true, "ani": 77.6484, "matched_fragments": 345, "total_fragments": 1618, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruegeria profundi", "strain": "strain=ZGT108", "accession": "GCA_001507545.1", "taxid": 1685378, "species_taxid": 1685378, "relation_to_type": "type", "validated": true, "ani": 77.5671, "matched_fragments": 326, "total_fragments": 1618, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudophaeobacter arcticus", "strain": "strain=DSM 23566", "accession": "GCA_000473205.1", "taxid": 385492, "species_taxid": 385492, "relation_to_type": "type", "validated": true, "ani": 77.4784, "matched_fragments": 356, "total_fragments": 1618, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chachezhania sediminis", "strain": "strain=CAU 1508", "accession": "GCA_009765275.1", "taxid": 2599291, "species_taxid": 2599291, "relation_to_type": "type", "validated": true, "ani": 77.2319, "matched_fragments": 337, "total_fragments": 1618, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter indolifex", "strain": "strain=DSM 14862", "accession": "GCA_022788655.1", "taxid": 225422, "species_taxid": 225422, "relation_to_type": "type", "validated": true, "ani": 77.1544, "matched_fragments": 265, "total_fragments": 1618, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salipiger marinus", "strain": "strain=DSM 26424", "accession": "GCA_900100085.1", "taxid": 555512, "species_taxid": 555512, "relation_to_type": "type", "validated": true, "ani": 77.1114, "matched_fragments": 325, "total_fragments": 1618, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudooceanicola aestuarii", "strain": "strain=E2-1", "accession": "GCA_010614805.1", "taxid": 2697319, "species_taxid": 2697319, "relation_to_type": "type", "validated": true, "ani": 76.9647, "matched_fragments": 283, "total_fragments": 1618, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum euryhalinum", "strain": "strain=DSM 4868", "accession": "GCA_004342445.1", "taxid": 35805, "species_taxid": 35805, "relation_to_type": "type", "validated": true, "ani": 76.8437, "matched_fragments": 221, "total_fragments": 1618, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marivivens niveibacter", "strain": "strain=MCCC 1A06712", "accession": "GCA_002150005.2", "taxid": 1930667, "species_taxid": 1930667, "relation_to_type": "type", "validated": true, "ani": 76.7753, "matched_fragments": 149, "total_fragments": 1618, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mangrovicoccus algicola", "strain": "strain=HB182678", "accession": "GCA_014903745.1", "taxid": 2771008, "species_taxid": 2771008, "relation_to_type": "type", "validated": true, "ani": 76.4388, "matched_fragments": 185, "total_fragments": 1618, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudogemmobacter bohemicus", "strain": "strain=Cd-10", "accession": "GCA_003290025.1", "taxid": 2250708, "species_taxid": 2250708, "relation_to_type": "type", "validated": true, "ani": 76.2512, "matched_fragments": 156, "total_fragments": 1618, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_007923355.1", "gtdb_species": "s__Phaeobacter_A marinintestinus", "ani": 100.0, "matched_fragments": 1618, "total_fragments": 1618, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Phaeobacter_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_000161775.1", "gtdb_species": "s__Ruegeria lacuscaerulensis", "ani": 78.2445, "matched_fragments": 475, "total_fragments": 1618, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Ruegeria", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.98", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_004358185.1", "gtdb_species": "s__Antarcticimicrobium luteum", "ani": 78.1273, "matched_fragments": 524, "total_fragments": 1618, "gtdb_taxonomy": 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