{ "type": "genome", "identifier": "GCF_007954425.1", "organism": "Novosphingobium ginsenosidimutans", "title": "Novosphingobium ginsenosidimutans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Hankyong National University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_007954425.1", "bioproject": "PRJNA224116", "biosample": "SAMN12419120", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1176536", "species_taxid": "1176536", "organism_name": "Novosphingobium ginsenosidimutans", "infraspecific_name": "strain=FW-6", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/08/11", "asm_name": "ASM795442v1", "asm_submitter": "Hankyong National University", "gbrs_paired_asm": "GCA_007954425.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/954/425/GCF_007954425.1_ASM795442v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3118872", "genome_size_ungapped": "3118872", "gc_percent": "64.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_007954425.1-RS_2024_03_22", "annotation_date": "2024-03-22", "total_gene_count": "3103", "protein_coding_gene_count": "3045", "non_coding_gene_count": "50", "pubmed_id": "23568197" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-08-11", "dateModified": "2019-08-11", "datePublished": "2019-08-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Novosphingobium ginsenosidimutans" ], "sample_taxid": [ "1176536" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea:Daejeon" ], "sample_host_location_id": [], "data_size": "0.863 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3118872", "Number of Sequences": "1", "Longest Sequences (bp)": "3118872", "N50 (bp)": "3118872", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "64.3", "Number of CDSs": "3078", "Average Protein Length": "312.6", "Coding Ratio (%)": "92.6", "Number of rRNAs": "3", "Number of tRNAs": "44", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Novosphingobium ginsenosidimutans", "strain": "strain=FW-6", "accession": "GCA_007954425.1", "taxid": 1176536, "species_taxid": 1176536, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1037, "total_fragments": 1039, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Novosphingobium arvoryzae", "strain": "strain=KCTC 32422", "accession": "GCA_014652615.1", "taxid": 1256514, "species_taxid": 1256514, "relation_to_type": "type", "validated": true, "ani": 80.7879, "matched_fragments": 584, "total_fragments": 1039, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium kunmingense", "strain": "strain=CGMCC 1.12274", "accession": "GCA_002813245.1", "taxid": 1211806, "species_taxid": 1211806, "relation_to_type": "type", "validated": true, "ani": 80.3729, "matched_fragments": 533, "total_fragments": 1039, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium aerophilum", "strain": "strain=4Y4", "accession": "GCA_014230305.1", "taxid": 2839843, "species_taxid": 2839843, "relation_to_type": "type", "validated": true, "ani": 79.9872, "matched_fragments": 457, "total_fragments": 1039, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium piscinae", "strain": "strain=KCTC 42194", "accession": "GCA_014230355.1", "taxid": 1507448, "species_taxid": 1507448, "relation_to_type": "type", "validated": true, "ani": 79.6773, "matched_fragments": 440, "total_fragments": 1039, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium huizhouense", "strain": "strain=c7", "accession": "GCA_020179475.1", "taxid": 2866625, "species_taxid": 2866625, "relation_to_type": "type", "validated": true, "ani": 79.507, "matched_fragments": 442, "total_fragments": 1039, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium jiangmenense", "strain": "strain=1Y9A", "accession": "GCA_015694345.1", "taxid": 2791981, "species_taxid": 2791981, "relation_to_type": "type", "validated": true, "ani": 79.3214, "matched_fragments": 452, "total_fragments": 1039, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium subterraneum", "strain": "strain=DSM 12447", "accession": "GCA_000807925.1", "taxid": 48936, "species_taxid": 48936, "relation_to_type": "type", "validated": true, "ani": 79.0376, "matched_fragments": 388, "total_fragments": 1039, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium fuchskuhlense", "strain": "strain=FNE08-7", "accession": "GCA_001519075.1", "taxid": 1117702, "species_taxid": 1117702, "relation_to_type": "type", "validated": true, "ani": 79.006, "matched_fragments": 396, "total_fragments": 1039, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium subterraneum", "strain": "strain=NBRC 16086", "accession": "GCA_001598575.1", "taxid": 48936, "species_taxid": 48936, "relation_to_type": "type", "validated": true, "ani": 79.0058, "matched_fragments": 377, "total_fragments": 1039, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium lentum", "strain": "strain=NBRC 107847", "accession": "GCA_001590965.1", "taxid": 145287, "species_taxid": 145287, "relation_to_type": "type", "validated": true, "ani": 78.8891, "matched_fragments": 438, "total_fragments": 1039, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium aquimarinum", "strain": "strain=M24A2M", "accession": "GCA_009746585.1", "taxid": 2682494, "species_taxid": 2682494, "relation_to_type": "type", "validated": true, "ani": 78.7148, "matched_fragments": 311, "total_fragments": 1039, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium marinum", "strain": "strain=DSM 29043", "accession": "GCA_013408095.1", "taxid": 1514948, "species_taxid": 1514948, "relation_to_type": "type", "validated": true, "ani": 78.5207, "matched_fragments": 277, "total_fragments": 1039, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium marinum", "strain": "strain=CGMCC 1.12918", "accession": "GCA_014640055.1", "taxid": 1514948, "species_taxid": 1514948, "relation_to_type": "type", "validated": true, "ani": 78.5075, "matched_fragments": 279, "total_fragments": 1039, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erythrobacter donghaensis", "strain": "strain=DSM 16220", "accession": "GCA_002155425.1", "taxid": 267135, "species_taxid": 267135, "relation_to_type": "suspected-type", "validated": true, "ani": 78.5031, "matched_fragments": 375, "total_fragments": 1039, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagerythrobacter marinus", "strain": "strain=H32", "accession": "GCA_009827515.1", "taxid": 538382, "species_taxid": 538382, "relation_to_type": "type", "validated": true, "ani": 78.4702, "matched_fragments": 371, "total_fragments": 1039, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium decolorationis", "strain": "strain=502str22", "accession": "GCA_018417475.1", "taxid": 2698673, "species_taxid": 2698673, "relation_to_type": "type", "validated": true, "ani": 78.3685, "matched_fragments": 331, "total_fragments": 1039, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium silvae", "strain": "strain=FGD1", "accession": "GCA_009856825.1", "taxid": 2692619, "species_taxid": 2692619, "relation_to_type": "type", "validated": true, "ani": 78.2492, "matched_fragments": 305, "total_fragments": 1039, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania flava", "strain": "strain=DSM 16421", "accession": "GCA_011762005.1", "taxid": 192812, "species_taxid": 192812, "relation_to_type": "type", "validated": true, "ani": 78.1307, "matched_fragments": 288, "total_fragments": 1039, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alteriqipengyuania abyssalis", 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