{
    "type": "genome",
    "identifier": "GCF_007971385.1",
    "organism": "Arachidicoccus ginsenosidivorans",
    "title": "Arachidicoccus ginsenosidivorans",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Hankyong National University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_007971385.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN12478316",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "496057",
        "species_taxid": "496057",
        "organism_name": "Arachidicoccus ginsenosidivorans",
        "infraspecific_name": "strain=Gsoil 809",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/08/12",
        "asm_name": "ASM797138v1",
        "asm_submitter": "Hankyong National University",
        "gbrs_paired_asm": "GCA_007971385.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/971/385/GCF_007971385.1_ASM797138v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5773153",
        "genome_size_ungapped": "5773153",
        "gc_percent": "41.000000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_007971385.1-RS_2024_10_23",
        "annotation_date": "2024-10-23",
        "total_gene_count": "5001",
        "protein_coding_gene_count": "4778",
        "non_coding_gene_count": "59",
        "pubmed_id": "27974091"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-08-12",
    "dateModified": "2019-08-12",
    "datePublished": "2019-08-12",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Arachidicoccus ginsenosidivorans"
        ],
        "sample_taxid": [
            "496057"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "South Korea: Pocheon"
        ],
        "sample_host_location_id": [],
        "data_size": "1.634 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 97.33,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5773153",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "5773153",
        "N50 (bp)": "5773153",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "41.1",
        "Number of CDSs": "4935",
        "Average Protein Length": "322.5",
        "Coding Ratio (%)": "82.7",
        "Number of rRNAs": "9",
        "Number of tRNAs": "47",
        "Number of CRISPRs": "4"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Arachidicoccus ginsenosidivorans",
                "strain": "strain=Gsoil 809",
                "accession": "GCA_007971385.1",
                "taxid": 496057,
                "species_taxid": 496057,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1923,
                "total_fragments": 1924,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Arachidicoccus rhizosphaerae",
                "strain": "strain=Vu-144",
                "accession": "GCA_900107765.1",
                "taxid": 551991,
                "species_taxid": 551991,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.9269,
                "matched_fragments": 651,
                "total_fragments": 1924,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Arachidicoccus terrestris",
                "strain": "strain=5GH13-10",
                "accession": "GCA_020042345.1",
                "taxid": 2875539,
                "species_taxid": 2875539,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.0528,
                "matched_fragments": 549,
                "total_fragments": 1924,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Filimonas lacunae",
                "strain": "strain=NBRC 104114",
                "accession": "GCA_002355595.1",
                "taxid": 477680,
                "species_taxid": 477680,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8296,
                "matched_fragments": 54,
                "total_fragments": 1924,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Arachidicoccus soli",
                "strain": "strain=KIS59-12",
                "accession": "GCA_003600625.1",
                "taxid": 2341117,
                "species_taxid": 2341117,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6217,
                "matched_fragments": 111,
                "total_fragments": 1924,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Foetidibacter luteolus",
                "strain": "strain=YG09",
                "accession": "GCA_009650435.1",
                "taxid": 2608880,
                "species_taxid": 2608880,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.4006,
                "matched_fragments": 60,
                "total_fragments": 1924,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 97.33,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_007971385.1",
                "gtdb_species": "s__Arachidicoccus ginsenosidivorans",
                "ani": 100.0,
                "matched_fragments": 1923,
                "total_fragments": 1924,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Arachidicoccus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_900107765.1",
                "gtdb_species": "s__Arachidicoccus rhizosphaerae",
                "ani": 79.9194,
                "matched_fragments": 649,
                "total_fragments": 1924,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Arachidicoccus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002355595.1",
                "gtdb_species": "s__Filimonas lacunae",
                "ani": 77.5671,
                "matched_fragments": 53,
                "total_fragments": 1924,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Filimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_003600625.1",
                "gtdb_species": "s__Arachidicoccus soli",
                "ani": 77.4518,
                "matched_fragments": 110,
                "total_fragments": 1924,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Arachidicoccus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_013106755.1",
                "gtdb_species": "s__Panacibacter sp013106755",
                "ani": 75.8589,
                "matched_fragments": 54,
                "total_fragments": 1924,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Panacibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": 4868714.0,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Arachidicoccus",
        "ginsenosidivorans"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}