{ "type": "genome", "identifier": "GCF_007971525.1", "organism": "Mucilaginibacter ginsenosidivorax", "title": "Mucilaginibacter ginsenosidivorax", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Hankyong National University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_007971525.1", "bioproject": "PRJNA224116", "biosample": "SAMN12478318", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "862126", "species_taxid": "862126", "organism_name": "Mucilaginibacter ginsenosidivorax", "infraspecific_name": "strain=KHI28", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/08/12", "asm_name": "ASM797152v1", "asm_submitter": "Hankyong National University", "gbrs_paired_asm": "GCA_007971525.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/971/525/GCF_007971525.1_ASM797152v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7811413", "genome_size_ungapped": "7811413", "gc_percent": "43.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_007971525.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "6472", "protein_coding_gene_count": "6371", "non_coding_gene_count": "67", "pubmed_id": "23812820" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-08-12", "dateModified": "2019-08-12", "datePublished": "2019-08-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Mucilaginibacter ginsenosidivorax" ], "sample_taxid": [ "862126" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Daejeon" ], "sample_host_location_id": [], "data_size": "2.202 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7811413", "Number of Sequences": "1", "Longest Sequences (bp)": "7811413", "N50 (bp)": "7811413", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "43.1", "Number of CDSs": "6350", "Average Protein Length": "352.0", "Coding Ratio (%)": "85.8", "Number of rRNAs": "9", "Number of tRNAs": "56", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mucilaginibacter ginsenosidivorax", "strain": "strain=KHI28", "accession": "GCA_007971525.1", "taxid": 862126, "species_taxid": 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter corticis", "strain": "strain=MAH-19", "accession": "GCA_007558865.1", "taxid": 2597670, "species_taxid": 2597670, "relation_to_type": "type", "validated": true, "ani": 77.7431, "matched_fragments": 393, "total_fragments": 2603, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter glaciei", "strain": "strain=ZB1P21", "accession": "GCA_014773245.1", "taxid": 2772109, "species_taxid": 2772109, "relation_to_type": "type", "validated": true, "ani": 77.6426, "matched_fragments": 369, "total_fragments": 2603, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter pallidiroseus", "strain": "strain=dk17", "accession": "GCA_007846085.1", "taxid": 2599295, "species_taxid": 2599295, "relation_to_type": "type", "validated": true, "ani": 77.6043, "matched_fragments": 319, "total_fragments": 2603, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter phyllosphaerae", "strain": "strain=PP-F2FG21", "accession": "GCA_004378255.1", "taxid": 1812349, "species_taxid": 1812349, "relation_to_type": "type", "validated": true, "ani": 77.5574, "matched_fragments": 473, "total_fragments": 2603, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter pedocola", "strain": "strain=TBZ30", "accession": "GCA_002013915.1", "taxid": 1792845, "species_taxid": 1792845, "relation_to_type": "type", "validated": true, "ani": 77.5468, "matched_fragments": 457, "total_fragments": 2603, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter auburnensis", "strain": "strain=DSM 28175", "accession": "GCA_002797815.1", "taxid": 1457233, "species_taxid": 1457233, "relation_to_type": "type", "validated": true, "ani": 77.5306, "matched_fragments": 253, "total_fragments": 2603, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter roseus", "strain": "strain=LMG 28454", "accession": "GCA_021215455.1", "taxid": 1528868, "species_taxid": 1528868, "relation_to_type": "type", "validated": true, "ani": 77.5232, "matched_fragments": 284, "total_fragments": 2603, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter conchicola", "strain": "strain=MYSH2", "accession": "GCA_003432115.1", "taxid": 2303333, "species_taxid": 2303333, "relation_to_type": "type", "validated": true, "ani": 77.4779, "matched_fragments": 395, "total_fragments": 2603, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter robiniae", "strain": "strain=F39-2", "accession": "GCA_012849215.1", "taxid": 2728022, "species_taxid": 2728022, "relation_to_type": "type", "validated": true, "ani": 77.2035, "matched_fragments": 183, "total_fragments": 2603, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, 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