{ "type": "genome", "identifier": "GCF_007988845.1", "organism": "Alkalibacterium putridalgicola", "title": "Alkalibacterium putridalgicola", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation", "publication": [ {} ], "properties": { "assembly_accession": "GCF_007988845.1", "bioproject": "PRJNA224116", "biosample": "SAMD00166028", "wgs_master": "BJUX00000000.1", "refseq_category": "na", "taxid": "426703", "species_taxid": "426703", "organism_name": "Alkalibacterium putridalgicola", "infraspecific_name": "strain=NBRC 103243", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/08/01", "asm_name": "ASM798884v1", "asm_submitter": "National Institute of Technology and Evaluation", "gbrs_paired_asm": "GCA_007988845.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/988/845/GCF_007988845.1_ASM798884v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2588643", "genome_size_ungapped": "2588643", "gc_percent": "43.000000", "replicon_count": "0", "scaffold_count": "73", "contig_count": "73", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_007988845.1-RS_2024_08_26", "annotation_date": "2024-08-26", "total_gene_count": "2443", "protein_coding_gene_count": "2371", "non_coding_gene_count": "47", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-08-01", "dateModified": "2019-08-01", "datePublished": "2019-08-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Alkalibacterium putridalgicola" ], "sample_taxid": [ "426703" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Thailand:Rayong, Samet Island" ], "sample_host_location_id": [], "data_size": "0.740 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2588643", "Number of Sequences": "73", "Longest Sequences (bp)": "216968", "N50 (bp)": "85488", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "43.2", "Number of CDSs": "2416", "Average Protein Length": "302.3", "Coding Ratio (%)": "84.6", "Number of rRNAs": "2", "Number of tRNAs": "40", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Alkalibacterium putridalgicola", "strain": "strain=NBRC 103243", "accession": "GCA_007988845.1", "taxid": 426703, 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"coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Alkalibacterium", "putridalgicola" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }