{ "type": "genome", "identifier": "GCF_007988905.1", "organism": "Gluconobacter kanchanaburiensis NBRC 103587", "title": "Gluconobacter kanchanaburiensis NBRC 103587", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation", "publication": [ {} ], "properties": { "assembly_accession": "GCF_007988905.1", "bioproject": "PRJNA224116", "biosample": "SAMD00166031", "wgs_master": "BJVA00000000.1", "refseq_category": "reference genome", "taxid": "1307948", "species_taxid": "563199", "organism_name": "Gluconobacter kanchanaburiensis NBRC 103587", "infraspecific_name": "strain=NBRC 103587", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/08/01", "asm_name": "ASM798890v1", "asm_submitter": "National Institute of Technology and Evaluation", "gbrs_paired_asm": "GCA_007988905.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/988/905/GCF_007988905.1_ASM798890v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2926833", "genome_size_ungapped": "2926833", "gc_percent": "58.500000", "replicon_count": "0", "scaffold_count": "46", "contig_count": "46", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_007988905.1-RS_2024_12_16", "annotation_date": "2024-12-16", "total_gene_count": "2724", "protein_coding_gene_count": "2622", "non_coding_gene_count": "53", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-08-01", "dateModified": "2019-08-01", "datePublished": "2019-08-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Gluconobacter kanchanaburiensis NBRC 103587" ], "sample_taxid": [ "1307948" ], "sample_host_organism": [ "Artocarpus heterophyllus" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Thailand:Kanjanaburi, Tong Pha Phum" ], "sample_host_location_id": [], "data_size": "0.831 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2926833", "Number of Sequences": "46", "Longest Sequences (bp)": "383780", "N50 (bp)": "181223", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "58.4", "Number of CDSs": "2699", "Average Protein Length": "323.1", "Coding Ratio (%)": "89.4", "Number of rRNAs": "3", "Number of tRNAs": "47", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Gluconobacter kanchanaburiensis", "strain": "strain=NBRC 103587", "accession": 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95, "status": "below_threshold" }, { "organism_name": "Gluconobacter potus", "strain": "strain=R-71646", "accession": "GCA_015244705.1", "taxid": 2724927, "species_taxid": 2724927, "relation_to_type": "type", "validated": true, "ani": 84.7619, "matched_fragments": 661, "total_fragments": 953, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gluconobacter roseus", "strain": "strain=NBRC 3990", "accession": "GCA_006538885.1", "taxid": 586239, "species_taxid": 586239, "relation_to_type": "type", "validated": true, "ani": 84.7127, "matched_fragments": 642, "total_fragments": 953, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gluconobacter morbifer", "strain": "strain=G707", "accession": "GCA_000234355.2", "taxid": 479935, "species_taxid": 479935, "relation_to_type": "type", "validated": true, "ani": 79.4567, "matched_fragments": 393, "total_fragments": 953, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Asaia 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"ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_006539125.1", "gtdb_species": "s__Gluconobacter sphaericus", "ani": 86.0414, "matched_fragments": 682, "total_fragments": 953, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Gluconobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.91", "min_intra_species_ani": "98.17", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.92", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_002723915.1", "gtdb_species": "s__Gluconobacter albidus", "ani": 85.7645, "matched_fragments": 670, "total_fragments": 953, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Gluconobacter", 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