{ "type": "genome", "identifier": "GCF_007989065.1", "organism": "Pseudonocardia asaccharolytica DSM 44247 = NBRC 16224", "title": "Pseudonocardia asaccharolytica DSM 44247 = NBRC 16224", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation", "publication": [ {} ], "properties": { "assembly_accession": "GCF_007989065.1", "bioproject": "PRJNA224116", "biosample": "SAMD00166238", "wgs_master": "BJVI00000000.1", "refseq_category": "na", "taxid": "1123024", "species_taxid": "54010", "organism_name": "Pseudonocardia asaccharolytica DSM 44247 = NBRC 16224", "infraspecific_name": "strain=NBRC 16224", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/08/01", "asm_name": "ASM798906v1", "asm_submitter": "National Institute of Technology and Evaluation", "gbrs_paired_asm": "GCA_007989065.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/989/065/GCF_007989065.1_ASM798906v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5024854", "genome_size_ungapped": "5024854", "gc_percent": "72.000000", "replicon_count": "0", "scaffold_count": "185", "contig_count": "185", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_007989065.1-RS_2024_09_09", "annotation_date": "2024-09-09", "total_gene_count": "5094", "protein_coding_gene_count": "4857", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-08-01", "dateModified": "2019-08-01", "datePublished": "2019-08-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudonocardia asaccharolytica DSM 44247 = NBRC 16224" ], "sample_taxid": [ "1123024" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.353 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5024854", "Number of Sequences": "185", "Longest Sequences (bp)": "221007", "N50 (bp)": "69665", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "71.8", "Number of CDSs": "4883", "Average Protein Length": "300.3", "Coding Ratio (%)": "87.6", "Number of rRNAs": "3", "Number of tRNAs": "57", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudonocardia asaccharolytica", "strain": "strain=NBRC 16224", "accession": "GCA_007989065.1", "taxid": 54010, "species_taxid": 54010, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1590, "total_fragments": 1595, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudonocardia asaccharolytica", "strain": "strain=DSM 44247", "accession": "GCA_000423625.1", "taxid": 54010, "species_taxid": 54010, "relation_to_type": "type", "validated": true, "ani": 99.9991, "matched_fragments": 1594, "total_fragments": 1595, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudonocardia acidicola", "strain": "strain=K10HN5", "accession": "GCA_012911935.1", "taxid": 2724939, "species_taxid": 2724939, "relation_to_type": "type", "validated": true, "ani": 81.729, "matched_fragments": 927, "total_fragments": 1595, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudonocardia bannensis", "strain": "strain=DSM 45300", "accession": "GCA_012911875.1", "taxid": 630973, "species_taxid": 630973, "relation_to_type": "type", "validated": true, "ani": 81.5406, "matched_fragments": 871, "total_fragments": 1595, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudonocardia dioxanivorans", "strain": "strain=CB1190", "accession": "GCA_000196675.2", "taxid": 240495, "species_taxid": 240495, "relation_to_type": "type", "validated": true, "ani": 80.2342, "matched_fragments": 874, "total_fragments": 1595, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudonocardia nigra", "strain": "strain=DSM 104088", "accession": "GCA_019396355.1", "taxid": 1921578, "species_taxid": 1921578, "relation_to_type": "type", "validated": true, "ani": 80.1852, "matched_fragments": 849, "total_fragments": 1595, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudonocardia sulfidoxydans", "strain": "strain=NBRC 16205", "accession": "GCA_007989085.1", "taxid": 54011, "species_taxid": 54011, "relation_to_type": "type", "validated": true, "ani": 80.0781, "matched_fragments": 810, "total_fragments": 1595, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudonocardia kunmingensis", "strain": "strain=DSM 45301", "accession": "GCA_006716445.1", "taxid": 630975, "species_taxid": 630975, "relation_to_type": "type", "validated": true, "ani": 79.6248, "matched_fragments": 872, "total_fragments": 1595, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudonocardia cypriaca", "strain": "strain=DSM 45511", "accession": "GCA_006717045.1", "taxid": 882449, "species_taxid": 882449, "relation_to_type": "type", "validated": true, "ani": 79.6102, "matched_fragments": 822, "total_fragments": 1595, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudonocardia alaniniphila", "strain": "strain=Y-16303", "accession": "GCA_022524485.1", "taxid": 75291, "species_taxid": 75291, "relation_to_type": "type", "validated": true, "ani": 79.3345, "matched_fragments": 799, "total_fragments": 1595, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces taklimakanensis", "strain": "strain=TRM43335", "accession": "GCA_009709575.1", "taxid": 2569853, "species_taxid": 2569853, "relation_to_type": "type", "validated": true, "ani": 76.2084, "matched_fragments": 355, "total_fragments": 1595, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sediminivirga luteola", "strain": "strain=CGMCC 1.12785", "accession": "GCA_014639315.1", "taxid": 1774748, "species_taxid": 1774748, "relation_to_type": "type", "validated": true, "ani": 76.1162, "matched_fragments": 164, "total_fragments": 1595, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tersicoccus phoenicis", "strain": "strain=DSM 30849", "accession": "GCA_001968835.1", "taxid": 554083, "species_taxid": 554083, "relation_to_type": "type", "validated": true, "ani": 76.1033, "matched_fragments": 204, "total_fragments": 1595, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sediminivirga luteola", "strain": "strain=CGMCC 1.12785", "accession": "GCA_021729215.1", "taxid": 1774748, "species_taxid": 1774748, "relation_to_type": "type", "validated": true, "ani": 76.0981, "matched_fragments": 161, "total_fragments": 1595, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces sedi", "strain": "strain=JCM 16909", "accession": "GCA_006335015.1", "taxid": 555059, "species_taxid": 555059, "relation_to_type": "type", "validated": true, "ani": 76.0207, "matched_fragments": 365, "total_fragments": 1595, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000423625.1", "gtdb_species": "s__Pseudonocardia asaccharolytica", "ani": 99.9991, "matched_fragments": 1594, "total_fragments": 1595, "gtdb_taxonomy": 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