{ "type": "genome", "identifier": "GCF_007989225.1", "organism": "Cellulomonas hominis", "title": "Cellulomonas hominis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation", "publication": [ {} ], "properties": { "assembly_accession": "GCF_007989225.1", "bioproject": "PRJNA224116", "biosample": "SAMD00166246", "wgs_master": "BJVQ00000000.1", "refseq_category": "na", "taxid": "156981", "species_taxid": "156981", "organism_name": "Cellulomonas hominis", "infraspecific_name": "strain=NBRC 16055", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/08/01", "asm_name": "ASM798922v1", "asm_submitter": "National Institute of Technology and Evaluation", "gbrs_paired_asm": "GCA_007989225.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/989/225/GCF_007989225.1_ASM798922v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4423528", "genome_size_ungapped": "4423528", "gc_percent": "75.000000", "replicon_count": "0", "scaffold_count": "161", "contig_count": "161", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_007989225.1-RS_2024_08_26", "annotation_date": "2024-08-26", "total_gene_count": "4283", "protein_coding_gene_count": "4138", "non_coding_gene_count": "74", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-08-01", "dateModified": "2019-08-01", "datePublished": "2019-08-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Cellulomonas hominis" ], "sample_taxid": [ "156981" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Switzerland" ], "sample_host_location_id": [], "data_size": "1.150 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4423528", "Number of Sequences": "161", "Longest Sequences (bp)": "195921", "N50 (bp)": "47809", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "75.1", "Number of CDSs": "4041", "Average Protein Length": "320.7", "Coding Ratio (%)": "87.9", "Number of rRNAs": "3", "Number of tRNAs": "80", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Cellulomonas hominis", "strain": "strain=NBRC 16055", "accession": "GCA_007989225.1", "taxid": 156981, "species_taxid": 156981, "relation_to_type": "suspected-type", "validated": true, "ani": 100.0, "matched_fragments": 1391, "total_fragments": 1402, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Cellulomonas hominis", "strain": "strain=DSM 9581", "accession": "GCA_014201095.1", "taxid": 156981, "species_taxid": 156981, "relation_to_type": "suspected-type", "validated": true, "ani": 99.9963, "matched_fragments": 1402, "total_fragments": 1402, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Cellulomonas denverensis", "strain": "strain=ATCC BAA-788", "accession": "GCA_012396125.1", "taxid": 264297, "species_taxid": 264297, "relation_to_type": "type", "validated": true, "ani": 81.9228, "matched_fragments": 799, "total_fragments": 1402, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas taurus", "strain": "strain=P40-2", "accession": "GCA_012931845.1", "taxid": 2729175, "species_taxid": 2729175, "relation_to_type": "type", "validated": true, "ani": 81.7031, "matched_fragments": 734, "total_fragments": 1402, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas fimi", "strain": "strain=NCTC7547", "accession": "GCA_900637695.1", "taxid": 1708, "species_taxid": 1708, "relation_to_type": "type", "validated": true, "ani": 80.4952, "matched_fragments": 734, "total_fragments": 1402, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas soli", "strain": "strain=DSM 24484", "accession": "GCA_013409305.1", "taxid": 931535, "species_taxid": 931535, "relation_to_type": "type", "validated": true, "ani": 80.4382, "matched_fragments": 689, "total_fragments": 1402, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas fimi", "strain": "strain=ATCC 484", "accession": "GCA_000212695.1", "taxid": 1708, "species_taxid": 1708, "relation_to_type": "type", "validated": true, "ani": 80.4375, "matched_fragments": 752, "total_fragments": 1402, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas cellasea", "strain": "strain=NBRC 3753", "accession": "GCA_006538745.1", "taxid": 43670, "species_taxid": 43670, "relation_to_type": "type", "validated": true, "ani": 80.3961, "matched_fragments": 738, "total_fragments": 1402, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas palmilytica", "strain": "strain=EW123", "accession": "GCA_021590045.1", "taxid": 2608402, "species_taxid": 2608402, "relation_to_type": "type", "validated": true, "ani": 80.2772, "matched_fragments": 683, "total_fragments": 1402, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas telluris", "strain": "strain=CPCC 204705", "accession": "GCA_004886325.1", "taxid": 2306636, "species_taxid": 2306636, "relation_to_type": "type", "validated": true, "ani": 80.2564, "matched_fragments": 703, "total_fragments": 1402, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas composti", "strain": "strain=NBRC 100758", "accession": "GCA_007990245.1", "taxid": 266130, "species_taxid": 266130, "relation_to_type": "type", "validated": true, "ani": 80.2208, "matched_fragments": 598, "total_fragments": 1402, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas fulva", "strain": "strain=DKR-3", "accession": "GCA_018531375.1", "taxid": 2835530, "species_taxid": 2835530, "relation_to_type": "type", "validated": true, "ani": 80.2061, "matched_fragments": 654, "total_fragments": 1402, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas cellasea", "strain": "strain=DSM 20118", "accession": "GCA_000767135.1", "taxid": 43670, "species_taxid": 43670, "relation_to_type": "type", "validated": true, "ani": 80.1563, "matched_fragments": 620, "total_fragments": 1402, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas terrae", "strain": "strain=NBRC 100819", "accession": "GCA_007990265.1", "taxid": 311234, "species_taxid": 311234, "relation_to_type": 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"matched_fragments": 658, "total_fragments": 1402, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oerskovia rustica", "strain": "strain=Sa4CUA1", "accession": "GCA_014836555.1", "taxid": 2762237, "species_taxid": 2762237, "relation_to_type": "type", "validated": true, "ani": 78.7319, "matched_fragments": 581, "total_fragments": 1402, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oerskovia merdavium", "strain": "strain=Sa2CUA9", "accession": "GCA_014836755.1", "taxid": 2762227, "species_taxid": 2762227, "relation_to_type": "type", "validated": true, "ani": 78.7123, "matched_fragments": 564, "total_fragments": 1402, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014201095.1", "gtdb_species": "s__Cellulomonas hominis", "ani": 99.9963, "matched_fragments": 1402, "total_fragments": 1402, "gtdb_taxonomy": 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