{ "type": "genome", "identifier": "GCF_007989305.1", "organism": "Acetobacter cibinongensis", "title": "Acetobacter cibinongensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation", "publication": [ {} ], "properties": { "assembly_accession": "GCF_007989305.1", "bioproject": "PRJNA224116", "biosample": "SAMD00166250", "wgs_master": "BJVU00000000.1", "refseq_category": "na", "taxid": "146475", "species_taxid": "146475", "organism_name": "Acetobacter cibinongensis", "infraspecific_name": "strain=NBRC 16605", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/08/01", "asm_name": "ASM798930v1", "asm_submitter": "National Institute of Technology and Evaluation", "gbrs_paired_asm": "GCA_007989305.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/989/305/GCF_007989305.1_ASM798930v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3096902", "genome_size_ungapped": "3096902", "gc_percent": "54.500000", "replicon_count": "0", "scaffold_count": "40", "contig_count": "40", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_007989305.1-RS_2024_12_16", "annotation_date": "2024-12-16", "total_gene_count": "2805", "protein_coding_gene_count": "2716", "non_coding_gene_count": "49", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-08-01", "dateModified": "2019-08-01", "datePublished": "2019-08-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Acetobacter cibinongensis" ], "sample_taxid": [ "146475" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Indonesia:Bogor" ], "sample_host_location_id": [], "data_size": "0.882 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3096902", "Number of Sequences": "40", "Longest Sequences (bp)": "625169", "N50 (bp)": "180151", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "54.4", "Number of CDSs": "2760", "Average Protein Length": "328.8", "Coding Ratio (%)": "87.9", "Number of rRNAs": "3", "Number of tRNAs": "42", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Acetobacter cibinongensis", "strain": "strain=NBRC 16605", "accession": "GCA_007989305.1", "taxid": 146475, "species_taxid": 146475, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1009, "total_fragments": 1009, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Acetobacter cibinongensis", "strain": "strain=4H-1", "accession": "GCA_000963925.1", "taxid": 146475, "species_taxid": 146475, "relation_to_type": "type", "validated": true, "ani": 99.9929, "matched_fragments": 992, "total_fragments": 1009, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Acetobacter orientalis", "strain": "strain=21F-2", "accession": "GCA_000963965.1", "taxid": 146474, "species_taxid": 146474, "relation_to_type": "type", "validated": true, "ani": 80.0591, "matched_fragments": 430, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acetobacter orientalis", "strain": "strain=NBRC 16606", "accession": "GCA_007989335.1", "taxid": 146474, "species_taxid": 146474, "relation_to_type": "type", "validated": true, "ani": 80.058, 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1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acetobacter tropicalis", "strain": "strain=NBRC 16470", "accession": "GCA_007989245.1", "taxid": 104102, "species_taxid": 104102, "relation_to_type": "type", "validated": true, "ani": 79.4566, "matched_fragments": 423, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acetobacter tropicalis", "strain": "strain=NBRC 16470", "accession": "GCA_000787635.2", "taxid": 104102, "species_taxid": 104102, "relation_to_type": "type", "validated": true, "ani": 79.4179, "matched_fragments": 428, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acetobacter cerevisiae", "strain": "strain=LMG 1625", "accession": "GCA_001580535.1", "taxid": 178900, "species_taxid": 178900, "relation_to_type": "type", "validated": true, "ani": 79.277, "matched_fragments": 363, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acetobacter lambici", "strain": "strain=LMG 27439", "accession": "GCA_011516885.1", "taxid": 1332824, "species_taxid": 1332824, "relation_to_type": "type", "validated": true, "ani": 78.5138, "matched_fragments": 268, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acetobacter ghanensis", "strain": "strain=LMG 23848T", "accession": "GCA_001499675.1", "taxid": 431306, "species_taxid": 431306, "relation_to_type": "type", "validated": true, "ani": 78.4175, "matched_fragments": 283, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acetobacter ghanensis", "strain": "strain=LMG 23848", "accession": "GCA_011516865.1", "taxid": 431306, "species_taxid": 431306, "relation_to_type": "type", "validated": true, "ani": 78.3922, "matched_fragments": 276, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acetobacter garciniae", "strain": 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