{
    "type": "genome",
    "identifier": "GCF_007989405.1",
    "organism": "Myxococcus virescens",
    "title": "Myxococcus virescens",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "National Institute of Technology and Evaluation",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_007989405.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00166254",
        "wgs_master": "BJVY00000000.1",
        "refseq_category": "na",
        "taxid": "83456",
        "species_taxid": "83456",
        "organism_name": "Myxococcus virescens",
        "infraspecific_name": "strain=NBRC 100334",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/08/01",
        "asm_name": "ASM798940v1",
        "asm_submitter": "National Institute of Technology and Evaluation",
        "gbrs_paired_asm": "GCA_007989405.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/989/405/GCF_007989405.1_ASM798940v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "9194578",
        "genome_size_ungapped": "9194578",
        "gc_percent": "69.000000",
        "replicon_count": "0",
        "scaffold_count": "196",
        "contig_count": "196",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_007989405.1-RS_2024_09_02",
        "annotation_date": "2024-09-02",
        "total_gene_count": "7613",
        "protein_coding_gene_count": "7421",
        "non_coding_gene_count": "69",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-08-01",
    "dateModified": "2019-08-01",
    "datePublished": "2019-08-01",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Myxococcus virescens"
        ],
        "sample_taxid": [
            "83456"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Canada"
        ],
        "sample_host_location_id": [],
        "data_size": "2.500 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 8.33,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "9194578",
        "Number of Sequences": "196",
        "Longest Sequences (bp)": "623947",
        "N50 (bp)": "144195",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "69.2",
        "Number of CDSs": "7549",
        "Average Protein Length": "357.9",
        "Coding Ratio (%)": "88.2",
        "Number of rRNAs": "3",
        "Number of tRNAs": "73",
        "Number of CRISPRs": "12"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Myxococcus virescens",
                "strain": "strain=NBRC 100334",
                "accession": "GCA_007989405.1",
                "taxid": 83456,
                "species_taxid": 83456,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 2969,
                "total_fragments": 2975,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Myxococcus virescens",
                "strain": "strain=DSM 2260",
                "accession": "GCA_900101905.1",
                "taxid": 83456,
                "species_taxid": 83456,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9989,
                "matched_fragments": 2966,
                "total_fragments": 2975,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Myxococcus xanthus",
                "strain": "strain=DSM 16526",
                "accession": "GCA_900106535.1",
                "taxid": 34,
                "species_taxid": 34,
                "relation_to_type": "type",
                "validated": true,
                "ani": 96.8306,
                "matched_fragments": 2711,
                "total_fragments": 2975,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Myxococcus vastator",
                "strain": "strain=AM301",
                "accession": "GCA_010894475.1",
                "taxid": 2709664,
                "species_taxid": 2709664,
                "relation_to_type": "type",
                "validated": true,
                "ani": 93.5858,
                "matched_fragments": 2102,
                "total_fragments": 2975,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pyxidicoccus trucidator",
                "strain": "strain=CA060A",
                "accession": "GCA_010894435.1",
                "taxid": 2709662,
                "species_taxid": 2709662,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.6811,
                "matched_fragments": 2145,
                "total_fragments": 2975,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pyxidicoccus caerfyrddinensis",
                "strain": "strain=CA032A",
                "accession": "GCA_010894405.1",
                "taxid": 2709663,
                "species_taxid": 2709663,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.6015,
                "matched_fragments": 2106,
                "total_fragments": 2975,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pyxidicoccus fallax",
                "strain": "strain=DSM 14698",
                "accession": "GCA_012933655.1",
                "taxid": 394095,
                "species_taxid": 394095,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.5882,
                "matched_fragments": 1958,
                "total_fragments": 2975,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corallococcus soli",
                "strain": "strain=ZKHCc1 1396",
                "accession": "GCA_014930455.1",
                "taxid": 2710757,
                "species_taxid": 2710757,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.1744,
                "matched_fragments": 1714,
                "total_fragments": 2975,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corallococcus silvisoli",
                "strain": "strain=c25j21",
                "accession": "GCA_009909145.1",
                "taxid": 2697031,
                "species_taxid": 2697031,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.1267,
                "matched_fragments": 1635,
                "total_fragments": 2975,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylosinus trichosporium",
                "strain": "strain=OB3b",
                "accession": "GCA_000178815.2",
                "taxid": 426,
                "species_taxid": 426,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.0065,
                "matched_fragments": 99,
                "total_fragments": 2975,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Eggerthella lenta",
                "strain": "strain=ATCC 25559",
                "accession": "GCA_003340105.1",
                "taxid": 84112,
                "species_taxid": 84112,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.9959,
                "matched_fragments": 79,
                "total_fragments": 2975,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Eggerthella lenta",
                "strain": "strain=DSM 2243",
                "accession": "GCA_000024265.1",
                "taxid": 84112,
                "species_taxid": 84112,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.9888,
                "matched_fragments": 80,
                "total_fragments": 2975,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Eggerthella lenta",
                "strain": "strain=UCSF2243",
                "accession": "GCA_003339945.1",
                "taxid": 84112,
                "species_taxid": 84112,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.9885,
                "matched_fragments": 80,
                "total_fragments": 2975,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylosinus trichosporium",
                "strain": "strain=OB3b",
                "accession": "GCA_002752655.1",
                "taxid": 426,
                "species_taxid": 426,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.9801,
                "matched_fragments": 104,
                "total_fragments": 2975,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas corticis",
                "strain": "strain=36D10-4-7",
                "accession": "GCA_012035195.1",
                "taxid": 2722791,
                "species_taxid": 2722791,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.867,
                "matched_fragments": 173,
                "total_fragments": 2975,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 8.33,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900101905.1",
                "gtdb_species": "s__Myxococcus virescens",
                "ani": 99.9941,
                "matched_fragments": 2967,
                "total_fragments": 2975,
                "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Myxococcia;o__Myxococcales;f__Myxococcaceae;g__Myxococcus",
                "ani_circumscription_radius": 96.8216,
                "mean_intra_species_ani": "98.11",
                "min_intra_species_ani": "97.12",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 4,
                "status": "conclusive"
            },
            {
                "accession": "GCF_900106535.1",
                "gtdb_species": "s__Myxococcus xanthus",
                "ani": 96.8161,
                "matched_fragments": 2713,
                "total_fragments": 2975,
                "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Myxococcia;o__Myxococcales;f__Myxococcaceae;g__Myxococcus",
                "ani_circumscription_radius": 96.8216,
                "mean_intra_species_ani": "99.36",
                "min_intra_species_ani": "96.84",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 10,
                "status": "-"
            },
            {
                "accession": "GCF_013116825.1",
                "gtdb_species": "s__Myxococcus xanthus_B",
                "ani": 96.628,
                "matched_fragments": 2535,
                "total_fragments": 2975,
                "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Myxococcia;o__Myxococcales;f__Myxococcaceae;g__Myxococcus",
                "ani_circumscription_radius": 96.6332,
                "mean_intra_species_ani": "99.98",
                "min_intra_species_ani": "99.98",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_010998615.1",
                "gtdb_species": "s__Myxococcus sp010998615",
                "ani": 96.3366,
                "matched_fragments": 2596,
                "total_fragments": 2975,
                "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Myxococcia;o__Myxococcales;f__Myxococcaceae;g__Myxococcus",
                "ani_circumscription_radius": 96.6778,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 9,
                "status": "-"
            },
            {
                "accession": "GCF_006402735.1",
                "gtdb_species": "s__Myxococcus xanthus_A",
                "ani": 95.8328,
                "matched_fragments": 2649,
                "total_fragments": 2975,
                "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Myxococcia;o__Myxococcales;f__Myxococcaceae;g__Myxococcus",
                "ani_circumscription_radius": 96.2302,
                "mean_intra_species_ani": "99.44",
                "min_intra_species_ani": "99.22",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_002305895.1",
                "gtdb_species": "s__Myxococcus macrosporus",
                "ani": 91.3205,
                "matched_fragments": 2479,
                "total_fragments": 2975,
                "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Myxococcia;o__Myxococcales;f__Myxococcaceae;g__Myxococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.54",
                "min_intra_species_ani": "98.54",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.155,
        "cell_length": 0.602,
        "doubling_h": 0.602,
        "growth_tmp": 28.0,
        "optimum_tmp": 27.944,
        "optimum_ph": null,
        "genome_size": 9240716.0,
        "gc_content": 69.469,
        "coding_genes": 7417.316,
        "rRNA16S_genes": 3.6,
        "tRNA_genes": 69.533,
        "gram_stain": 0.0,
        "sporulation": 1.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Myxococcus",
        "virescens"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}