{ "type": "genome", "identifier": "GCF_007989705.1", "organism": "Enterococcus thailandicus", "title": "Enterococcus thailandicus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation", "publication": [ {} ], "properties": { "assembly_accession": "GCF_007989705.1", "bioproject": "PRJNA224116", "biosample": "SAMD00166011", "wgs_master": "BJUG00000000.1", "refseq_category": "na", "taxid": "417368", "species_taxid": "417368", "organism_name": "Enterococcus thailandicus", "infraspecific_name": "strain=NBRC 101867", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/08/01", "asm_name": "ASM798970v1", "asm_submitter": "National Institute of Technology and Evaluation", "gbrs_paired_asm": "GCA_007989705.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/989/705/GCF_007989705.1_ASM798970v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2783774", "genome_size_ungapped": "2783774", "gc_percent": "36.500000", "replicon_count": "0", "scaffold_count": "36", "contig_count": "36", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_007989705.1-RS_2024_08_02", "annotation_date": "2024-08-02", "total_gene_count": "2637", "protein_coding_gene_count": "2553", "non_coding_gene_count": "48", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-08-01", "dateModified": "2019-08-01", "datePublished": "2019-08-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Enterococcus thailandicus" ], "sample_taxid": [ "417368" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Thailand" ], "sample_host_location_id": [], "data_size": "0.784 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2783774", "Number of Sequences": "36", "Longest Sequences (bp)": "330024", "N50 (bp)": "166285", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "36.6", "Number of CDSs": "2597", "Average Protein Length": "306.9", "Coding Ratio (%)": "85.9", "Number of rRNAs": "3", "Number of tRNAs": "40", "Number of CRISPRs": "5" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Enterococcus thailandicus", "strain": "strain=NBRC 101867", "accession": "GCA_007989705.1", "taxid": 417368, "species_taxid": 417368, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 910, "total_fragments": 910, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Enterococcus thailandicus", "strain": "strain=DSM 21767", "accession": "GCA_001886265.1", "taxid": 417368, "species_taxid": 417368, "relation_to_type": "type", "validated": true, "ani": 99.9847, "matched_fragments": 893, "total_fragments": 910, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Enterococcus durans", "strain": "strain=FDAARGOS 1437", "accession": "GCA_019048325.1", "taxid": 53345, "species_taxid": 53345, "relation_to_type": "type", "validated": true, "ani": 79.873, "matched_fragments": 325, "total_fragments": 910, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus durans", "strain": "strain=NBRC 100479", "accession": "GCA_001544215.1", "taxid": 53345, "species_taxid": 53345, "relation_to_type": "type", "validated": true, "ani": 79.761, "matched_fragments": 311, "total_fragments": 910, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus faecium", "strain": "strain=NCTC7171", "accession": "GCA_900447735.1", "taxid": 1352, "species_taxid": 1352, "relation_to_type": "type", "validated": true, "ani": 79.7001, "matched_fragments": 353, "total_fragments": 910, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus lactis", "strain": "strain=LMG 25958", "accession": "GCA_015904215.1", "taxid": 357441, "species_taxid": 357441, "relation_to_type": "type", "validated": true, "ani": 79.699, "matched_fragments": 339, "total_fragments": 910, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus faecium", "strain": "strain=NBRC 100486", "accession": "GCA_001544255.1", "taxid": 1352, "species_taxid": 1352, "relation_to_type": "type", "validated": true, "ani": 79.4242, "matched_fragments": 341, "total_fragments": 910, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus hirae", "strain": "strain=ATCC 9790", "accession": "GCA_000407425.1", "taxid": 1354, "species_taxid": 1354, "relation_to_type": "type", "validated": true, "ani": 79.3482, "matched_fragments": 323, "total_fragments": 910, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus hirae", "strain": "strain=DSM 20160", "accession": "GCA_001885955.1", "taxid": 1354, "species_taxid": 1354, "relation_to_type": "type", "validated": true, "ani": 79.343, "matched_fragments": 324, "total_fragments": 910, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus hirae", "strain": "strain=ATCC 9790", "accession": "GCA_000271405.2", "taxid": 1354, "species_taxid": 1354, "relation_to_type": "type", "validated": true, "ani": 79.3108, "matched_fragments": 333, "total_fragments": 910, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus hirae", "strain": "strain=ATCC 9790", "accession": "GCA_000393835.1", "taxid": 1354, "species_taxid": 1354, "relation_to_type": "type", "validated": true, "ani": 79.2546, "matched_fragments": 344, "total_fragments": 910, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus villorum", "strain": "strain=NBRC 100699", "accession": "GCA_007990225.1", "taxid": 112904, "species_taxid": 112904, "relation_to_type": "type", "validated": true, "ani": 79.0953, "matched_fragments": 315, "total_fragments": 910, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus faecalis", "strain": "strain=PartL-Efaecalis-RM8376", "accession": "GCA_022869705.1", "taxid": 1351, "species_taxid": 1351, "relation_to_type": "type", "validated": true, "ani": 78.2631, "matched_fragments": 178, "total_fragments": 910, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus haemoperoxidus", "strain": "strain=ATCC BAA-382", "accession": "GCA_000407165.1", "taxid": 155618, "species_taxid": 155618, "relation_to_type": "type", "validated": true, "ani": 77.8361, "matched_fragments": 155, "total_fragments": 910, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus quebecensis", "strain": "strain=LMG 26306", "accession": "GCA_001730365.1", "taxid": 903983, "species_taxid": 903983, "relation_to_type": "type", "validated": true, "ani": 77.6105, "matched_fragments": 144, "total_fragments": 910, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus quebecensis", "strain": "strain=DSM 23327", "accession": "GCA_001886145.1", "taxid": 903983, "species_taxid": 903983, "relation_to_type": "type", "validated": true, "ani": 77.5453, "matched_fragments": 140, "total_fragments": 910, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001886265.1", "gtdb_species": "s__Enterococcus_B thailandicus", "ani": 99.9847, "matched_fragments": 893, "total_fragments": 910, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.46", "min_intra_species_ani": "99.20", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.90", "num_clustered_genomes": 6, "status": "conclusive" }, { "accession": "GCF_017315945.1", "gtdb_species": "s__Enterococcus_B sp017315945", "ani": 91.483, "matched_fragments": 733, "total_fragments": 910, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_017316125.1", "gtdb_species": 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