# locus_id	locus_tag	location	classification	internal_stop	indel	ref_id	description	query_cov	ref_cov	identity
MGA_87	LOCUS_00870	sequence001:89990..90376(+)	partial			WP_011475874.1	site-specific integrase	94.5	44.9	37.9
MGA_139	LOCUS_01390	sequence001:146403..158366(-)	partial			WP_003148161.1	two-partner secretion system adhesin CdrA	33.0	60.1	23.2
MGA_140	LOCUS_01400	sequence001:158515..165270(-)	partial			WP_000278319.1	CshA/CshB family fibrillar adhesin-related protein	57.4	32.9	24.2
MGA_156	LOCUS_01550	sequence002:17413..17952(-)	partial			WP_011836537.1	cob(I)yrinic acid a,c-diamide adenosyltransferase	78.2	74.9	34.0
MGA_162	LOCUS_01610	sequence002:22955..23428(-)	partial			WP_001029501.1	two-domain cob(I)yrinic acid a,c-diamide adenosyltransferase PduO	75.8	35.5	43.7
MGA_163	LOCUS_01620	sequence002:23445..24023(-)	partial			WP_009931568.1	cob(I)yrinic acid a,c-diamide adenosyltransferase	88.0	50.8	59.2
MGA_170	LOCUS_01690	sequence002:27081..27431(-)	partial			WP_011836576.1	glycerol dehydratase reactivase beta/small subunit family protein	73.3	69.8	47.2
MGA_177	LOCUS_01760	sequence002:33656..34513(+)	partial			WP_003721549.1	PocR ligand-binding domain-containing protein	36.1	35.0	44.7
MGA_179	LOCUS_01780	sequence002:34963..35496(-)	partial			WP_000673679.1	NAD(P)H-dependent oxidoreductase	90.4	38.6	37.5
MGA_193	LOCUS_01920	sequence002:46978..47313(-)	partial			WP_003721603.1	energy-coupling factor ABC transporter substrate-binding protein	73.0	82.7	56.8
MGA_236	LOCUS_02350	sequence002:87391..88302(-)	partial			WP_005113216.1	SDR family NAD(P)-dependent oxidoreductase	75.2	74.0	32.5
MGA_237	LOCUS_02360	sequence002:88368..88964(-)	partial			WP_010963779.1	TetR/AcrR family transcriptional regulator	46.0	48.7	29.7
MGA_263	LOCUS_02620	sequence002:113487..113966(+)	partial			WP_003641222.1	DUF4811 domain-containing protein	85.5	61.7	30.4
MGA_271	LOCUS_02700	sequence002:122911..123858(-)	partial			WP_011101680.1	cell division protein FtsQ/DivIB	68.9	74.6	47.9
MGA_283	LOCUS_02820	sequence002:136617..137312(-)	partial			WP_003640871.1	methyltransferase domain-containing protein	89.2	72.5	60.2
MGA_307	LOCUS_03050	sequence003:6022..7050(+)	partial			WP_011102154.1	NlpC/P60 family protein	67.3	61.9	20.3
MGA_311	LOCUS_03090	sequence003:10160..10444(-)	partial			WP_003641122.1	hypothetical protein	72.3	81.9	47.1
MGA_425	LOCUS_04230	sequence004:44405..45109(-)	frameshift		45281	WP_010774185.1	site-specific integrase	86.3	48.8	39.1
MGA_432	LOCUS_04300	sequence004:48398..48682(-)	frameshift		48352,48457	WP_011101779.1	ImmA/IrrE family metallo-endopeptidase	79.8	54.7	49.3
MGA_439	LOCUS_04370	sequence004:52587..52769(+)	partial			WP_003245120.1	phage terminase small subunit	93.3	31.4	60.7
MGA_450	LOCUS_04480	sequence004:60406..61251(+)	partial			WP_011254051.1	CAP domain-containing protein	98.6	65.3	26.0
MGA_459	LOCUS_04570	sequence005:7934..10810(-)	partial			WP_011101641.1	translation initiation factor IF-2	64.8	72.1	72.3
MGA_468	LOCUS_04660	sequence005:15298..15873(-)	partial			WP_002263187.1	zeta toxin family protein	76.4	67.3	37.1
MGA_517	LOCUS_05150	sequence006:4923..5525(-)	frameshift,internal_stop_codon	5589..5591(-)	5607	WP_011674284.1	glutamate racemase	96.5	40.5	56.6
MGA_529	LOCUS_05270	sequence006:16167..16547(-)	partial			WP_003723849.1	CvpA family protein	71.4	50.0	33.3
MGA_538	LOCUS_05360	sequence006:24932..25381(-)	partial			WP_003700554.1	preprotein translocase subunit YajC	53.0	62.7	57.0
MGA_561	LOCUS_05590	sequence006:50752..51225(-)	partial			WP_003641486.1	JAB domain-containing protein	82.8	61.1	45.4
MGA_585	LOCUS_05830	sequence007:12258..13781(+)	partial			WP_001035315.1	pneumococcal surface protein A	43.4	32.5	40.5
MGA_597	LOCUS_05950	sequence007:25115..27133(+)	partial			WP_000458116.1	choline-binding protein CbpA	32.3	31.4	41.7
MGA_677	LOCUS_06750	sequence008:49375..49878(+)	partial			WP_011475695.1	DUF4767 domain-containing protein	53.9	25.3	43.5
MGA_703	LOCUS_07010	sequence009:22229..23014(+)	partial			WP_001035315.1	pneumococcal surface protein A	69.0	29.1	40.9
MGA_704	LOCUS_07020	sequence009:23150..23902(-)	partial			WP_000458116.1	choline-binding protein CbpA	78.0	25.2	43.6
MGA_782	LOCUS_07800	sequence010:43567..44613(+)	partial			WP_001140268.1	DUF3114 domain-containing protein	77.0	74.3	29.7
MGA_797	LOCUS_07940	sequence011:2298..2882(-)	partial			WP_010774188.1	DUF4950 domain-containing protein	27.8	22.0	60.0
MGA_798	LOCUS_07950	sequence011:2995..3831(-)	partial			WP_000804507.1	HIRAN domain-containing protein	50.4	44.9	31.0
MGA_800	LOCUS_07970	sequence011:4133..4468(-)	partial			WP_137628160.1	helix-turn-helix transcriptional regulator	91.0	71.9	40.6
MGA_801	LOCUS_07980	sequence011:4702..4911(+)	partial			WP_003131489.1	XRE family transcriptional regulator	98.6	55.7	36.8
MGA_802	LOCUS_07990	sequence011:4908..5219(+)	internal_stop_codon	5217..5219(+)		WP_001148557.1	phage antirepressor KilAC domain-containing protein	100.0	41.3	43.9
MGA_803	LOCUS_08000	sequence011:5223..5678(+)	partial			WP_011475622.1	phage antirepressor KilAC domain-containing protein	95.4	59.5	60.3
MGA_829	LOCUS_08260	sequence011:18763..19455(+)	partial			WP_000642728.1	Clp protease ClpP	73.0	68.2	40.5
MGA_840	LOCUS_08370	sequence011:28879..30504(+)	partial			WP_011475663.1	phage tail protein	93.2	67.3	27.5
MGA_849	LOCUS_08460	sequence011:38331..40034(+)	partial			WP_000753855.1	choline-binding protein PcpA	35.3	28.4	46.5
MGA_851	LOCUS_08480	sequence011:41377..41913(+)	partial			WP_011475532.1	L,D-transpeptidase	80.3	69.4	55.9
MGA_870	LOCUS_08670	sequence012:7656..9848(+)	partial			WP_011101414.1	DNA translocase FtsK	94.7	64.0	56.0
MGA_872	LOCUS_08690	sequence012:11641..12051(-)	partial			WP_011861830.1	helix-turn-helix transcriptional regulator	52.9	49.6	47.2
MGA_896	LOCUS_08930	sequence012:37625..37942(+)	partial			WP_003643360.1	MerR family transcriptional regulator	84.8	65.3	39.6
MGA_906	LOCUS_09030	sequence013:5472..6029(-)	partial			WP_010906406.1	TetR/AcrR family transcriptional regulator	33.5	30.4	56.5
MGA_937	LOCUS_09340	sequence013:32582..32803(-)	frameshift		32919	WP_002355943.1	NCS2 family permease	94.5	14.7	65.2
MGA_938	LOCUS_09350	sequence013:32875..34041(-)	frameshift		32925	WP_003562776.1	NCS2 family permease	97.9	79.6	47.9
MGA_940	LOCUS_09370	sequence013:35172..35714(-)	partial			WP_000656771.1	TetR/AcrR family transcriptional regulator	36.7	31.9	57.6
MGA_945	LOCUS_09420	sequence014:2323..2673(-)	partial			WP_013223897.1	MerR family transcriptional regulator	84.5	68.8	37.4
MGA_954	LOCUS_09510	sequence014:13528..14658(+)	partial			WP_011922168.1	family 16 glycosylhydrolase	82.4	22.5	25.6
MGA_957	LOCUS_09540	sequence014:16345..16806(+)	frameshift		16728	WP_010905507.1	polysaccharide deacetylase family protein	79.7	43.8	42.6
MGA_959	LOCUS_09560	sequence014:17261..18136(-)	partial			WP_002681336.1	2-dehydropantoate 2-reductase N-terminal domain-containing protein	96.9	54.0	36.5
MGA_960	LOCUS_09570	sequence014:18265..18816(+)	partial			WP_094667284.1	TetR/AcrR family transcriptional regulator	63.9	53.4	34.7
MGA_961	LOCUS_09580	sequence014:19165..20970(+)	partial			WP_002296832.1	AAA family ATPase	48.8	41.4	36.7
MGA_975	LOCUS_09720	sequence014:33046..33396(+)	partial			WP_002321425.1	metalloregulator ArsR/SmtB family transcription factor	70.7	70.7	48.8
MGA_976	LOCUS_09730	sequence014:33383..33994(+)	partial			WP_010943590.1	cation transporter	81.3	74.9	29.1
MGA_1000	LOCUS_09970	sequence015:12744..17201(+)	partial			WP_011475661.1	tape measure protein	53.3	65.8	28.5
MGA_1011	LOCUS_10080	sequence015:24920..26188(+)	partial			WP_001035315.1	pneumococcal surface protein A	52.6	34.6	42.0
MGA_1020	LOCUS_10170	sequence016:39..434(-)	partial			WP_011476013.1	ASCH domain-containing protein	77.1	67.8	49.5
MGA_1045	LOCUS_10420	sequence016:20196..20585(-)	internal_stop_codon	20196..20198(-)		WP_016381870.1	hypothetical protein	100.0	76.8	100.0
MGA_1047	LOCUS_10440	sequence016:21115..21423(-)	partial			WP_061777522.1	hypothetical protein	100.0	40.3	96.1
MGA_1057	LOCUS_10540	sequence016:27265..27606(+)	partial			WP_000577652.1	helix-turn-helix transcriptional regulator	92.9	72.5	46.3
MGA_1061	LOCUS_10580	sequence016:30129..30560(-)	frameshift		30553	WP_050340461.1	site-specific integrase	98.6	72.3	82.3
MGA_1077	LOCUS_10730	sequence017:14944..15429(+)	partial			WP_005810368.1	MarR family transcriptional regulator	42.2	33.5	50.0
MGA_1082	LOCUS_10780	sequence017:19512..20063(+)	partial			WP_002297079.1	TMEM175 family protein	68.9	64.3	34.1
MGA_1088	LOCUS_10840	sequence017:23369..23575(-)	partial			WP_003642405.1	2,3-diphosphoglycerate-dependent phosphoglycerate mutase	94.1	27.8	76.6
MGA_1089	LOCUS_10850	sequence017:23572..25518(-)	partial			WP_010963349.1	MDR family MFS transporter	94.3	67.3	35.6
MGA_1090	LOCUS_10860	sequence017:25584..26048(-)	partial			WP_010963880.1	MarR family winged helix-turn-helix transcriptional regulator	70.1	73.5	31.5
MGA_1092	LOCUS_10880	sequence017:27088..28851(-)	partial			WP_011084726.1	DUF87 domain-containing protein	26.7	23.6	36.1
MGA_1093	LOCUS_10890	sequence017:28841..29830(-)	partial			WP_011104962.1	SIR2 family protein	49.8	51.4	31.1
MGA_1123	LOCUS_11190	sequence019:4094..4744(+)	partial			WP_164924808.1	NAD(P)H-hydrate dehydratase	98.6	41.2	39.6
MGA_1129	LOCUS_11250	sequence019:10063..10206(-)	frameshift		10077	WP_003642121.1	glycosyltransferase	87.2	8.0	73.2
MGA_1131	LOCUS_11270	sequence019:20285..24037(-)	partial			WP_207215633.1	MucBP domain-containing protein	36.6	38.9	24.0
MGA_1147	LOCUS_11420	sequence020:24463..25176(-)	partial			WP_003392149.1	hypothetical protein	75.9	68.7	26.9
MGA_1173	LOCUS_11670	sequence021:21317..>25524(-)	partial			WP_013246158.1	MBG domain-containing protein	60.2	45.4	26.6
MGA_1189	LOCUS_11830	sequence022:13191..13712(-)	partial			WP_011475904.1	Ltp family lipoprotein	56.1	44.9	63.9
MGA_1201	LOCUS_11950	sequence022:18797..19222(+)	partial			WP_003703384.1	single-stranded DNA-binding protein	85.1	66.1	71.9
MGA_1202	LOCUS_11960	sequence022:19235..20047(+)	partial			WP_000945520.1	replication protein	44.8	42.0	33.9
MGA_1262	LOCUS_12560	sequence024:18181..18813(-)	partial			WP_003596039.1	helix-turn-helix domain-containing protein	62.4	63.6	43.6
MGA_1268	LOCUS_12620	sequence024:22347..>24192(-)	partial			WP_002682205.1	AIPR family protein	63.4	64.6	27.5
MGA_1362	LOCUS_13550	sequence029:1..625(+)	partial			WP_011088575.1	aldehyde reductase	70.0	42.4	31.8
MGA_1394	LOCUS_13870	sequence030:12489..12980(-)	partial			WP_002369291.1	phosphoribosyltransferase family protein	96.9	68.4	38.6
MGA_1407	LOCUS_13990	sequence031:9048..9656(+)	partial			WP_011101933.1	accessory Sec system glycosyltransferase Asp1	32.7	13.1	42.0
MGA_1408	LOCUS_14000	sequence031:9675..10490(+)	internal_stop_codon	9654..9656(+)		WP_000219532.1	accessory Sec system glycosyltransferase GtfA	98.2	53.2	35.3
MGA_1418	LOCUS_14100	sequence031:18913..19347(+)	frameshift		18899	WP_011673933.1	TMEM175 family protein	94.4	73.6	31.7
MGA_1420	LOCUS_14120	sequence032:120..293(+)	partial			WP_003643998.1	hypothetical protein	98.2	73.7	55.4
MGA_1434	LOCUS_14260	sequence032:13582..14145(-)	partial			WP_011101963.1	TetR/AcrR family transcriptional regulator	80.7	68.4	31.1
MGA_1441	LOCUS_14330	sequence033:955..1515(+)	partial			WP_000204281.1	dihydroxyacetone kinase transcriptional activator DhaS	55.9	60.1	32.1
MGA_1449	LOCUS_14410	sequence033:10020..11057(-)	partial			WP_003567693.1	TMEM175 family protein	63.5	74.7	32.4
MGA_1460	LOCUS_14520	sequence034:1927..2619(-)	internal_stop_codon	2626..2628(-)		WP_011674001.1	zinc-binding alcohol dehydrogenase family protein	96.1	69.4	43.0
MGA_1461	LOCUS_14530	sequence034:2626..2874(-)	internal_stop_codon	2626..2628(-)		WP_011674001.1	zinc-binding alcohol dehydrogenase family protein	97.6	25.8	56.2
MGA_1467	LOCUS_14590	sequence034:6468..7082(-)	frameshift		7087	WP_011443642.1	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	84.8	51.5	34.7
MGA_1468	LOCUS_14600	sequence034:7076..7525(-)	frameshift		7093	WP_000975998.1	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	94.0	37.4	50.0
MGA_1493	LOCUS_14850	sequence036:375..1622(+)	partial			WP_000414323.1	glycosyltransferase	86.7	31.1	28.9
MGA_1498	LOCUS_14900	sequence036:4810..7374(-)	partial			WP_011022048.1	RND family transporter	69.9	79.9	29.7
MGA_1509	LOCUS_15010	sequence037:784..1941(-)	partial			WP_000391547.1	low temperature requirement protein A	63.6	66.9	23.8
MGA_1552	LOCUS_15440	sequence039:15140..15634(+)	partial			WP_001039194.1	DUF1836 domain-containing protein	65.9	74.5	36.0
MGA_1591	LOCUS_15810	sequence041:12205..13857(+)	partial			WP_001035315.1	pneumococcal surface protein A	46.9	42.3	39.2
MGA_1597	LOCUS_15860	sequence042:2257..3129(+)	partial			WP_008765270.1	glycosyltransferase family 8 protein	45.2	42.7	27.1
MGA_1603	LOCUS_15920	sequence042:7707..8375(+)	partial			WP_002387338.1	lipoprotein	70.3	70.9	38.7
MGA_1649	LOCUS_16380	sequence045:11562..12293(-)	partial			WP_012869115.1	Sir2 family NAD-dependent protein deacetylase	73.7	74.8	37.0
MGA_1672	LOCUS_16610	sequence047:10318..11064(-)	internal_stop_codon	11074..11076(-)		WP_001228167.1	alpha/beta hydrolase	92.3	72.7	34.0
MGA_1676	LOCUS_16650	sequence048:63..767(-)	partial			WP_000764211.1	ester cyclase	52.6	69.0	36.0
MGA_1691	LOCUS_16800	sequence049:3097..3684(+)	partial			WP_011254124.1	DNA-directed RNA polymerase subunit sigma	52.8	56.2	32.0
MGA_1727	LOCUS_17150	sequence052:161..388(-)	partial			WP_003569078.1	IS3 family transposase	82.7	22.5	83.9
MGA_1735	LOCUS_17230	sequence052:4813..5208(+)	partial			WP_168722861.1	IS3 family transposase	61.1	30.7	60.5
MGA_1762	LOCUS_17500	sequence055:3857..4465(+)	partial			WP_011674780.1	MarR family transcriptional regulator	64.9	70.3	38.7
MGA_1794	LOCUS_17820	sequence058:6797..7519(+)	partial			WP_002680079.1	DUF1361 domain-containing protein	67.5	76.7	32.0
MGA_1798	LOCUS_17860	sequence059:247..1113(+)	partial			WP_003578518.1	glycosyltransferase family 8 protein	62.8	63.8	27.7
MGA_1832	LOCUS_18200	sequence063:166..639(+)	partial			WP_011037880.1	DNA-3-methyladenine glycosylase I	51.0	44.7	41.2
MGA_1842	LOCUS_18300	sequence064:107..2335(-)	partial			WP_011101852.1	Na+/H+ antiporter	71.7	81.3	40.5
MGA_1843	LOCUS_18310	sequence064:2726..3295(+)	partial			WP_011072274.1	serine O-acetyltransferase	84.7	58.6	53.8
MGA_1866	LOCUS_18540	sequence067:2965..6261(+)	partial			WP_011101486.1	KxYKxGKxW signal peptide domain-containing protein	24.5	11.4	23.6
MGA_1885	LOCUS_18720	sequence071:1573..2100(-)	partial			WP_010905027.1	helix-turn-helix transcriptional regulator	42.9	70.1	46.7
MGA_1891	LOCUS_18780	sequence072:1536..2006(-)	partial			WP_049878148.1	MarR family winged helix-turn-helix transcriptional regulator	80.1	67.8	28.0
MGA_1936	LOCUS_19230	sequence078:5716..6276(-)	partial			WP_000976722.1	VanZ family protein	41.4	49.0	36.4