{
    "type": "genome",
    "identifier": "GCF_007989785.1",
    "organism": "Bacillus spizizenii",
    "title": "Bacillus spizizenii",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "National Institute of Technology and Evaluation",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_007989785.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00166007",
        "wgs_master": "BJUC00000000.1",
        "refseq_category": "na",
        "taxid": "96241",
        "species_taxid": "96241",
        "organism_name": "Bacillus spizizenii",
        "infraspecific_name": "strain=NBRC 101239",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/08/01",
        "asm_name": "ASM798978v1",
        "asm_submitter": "National Institute of Technology and Evaluation",
        "gbrs_paired_asm": "GCA_007989785.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/989/785/GCF_007989785.1_ASM798978v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4092643",
        "genome_size_ungapped": "4092643",
        "gc_percent": "44.000000",
        "replicon_count": "0",
        "scaffold_count": "26",
        "contig_count": "26",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_007989785.1-RS_2024_08_26",
        "annotation_date": "2024-08-26",
        "total_gene_count": "4149",
        "protein_coding_gene_count": "3987",
        "non_coding_gene_count": "42",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-08-01",
    "dateModified": "2019-08-01",
    "datePublished": "2019-08-01",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Bacillus spizizenii"
        ],
        "sample_taxid": [
            "96241"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Tunisia:Nefta, Sahara desert"
        ],
        "sample_host_location_id": [],
        "data_size": "1.163 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4092643",
        "Number of Sequences": "26",
        "Longest Sequences (bp)": "1192656",
        "N50 (bp)": "376911",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "43.8",
        "Number of CDSs": "4077",
        "Average Protein Length": "294.9",
        "Coding Ratio (%)": "88.1",
        "Number of rRNAs": "0",
        "Number of tRNAs": "35",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Bacillus spizizenii",
                "strain": "strain=NBRC 101239",
                "accession": "GCA_007989785.1",
                "taxid": 96241,
                "species_taxid": 96241,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1350,
                "total_fragments": 1351,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Bacillus spizizenii",
                "strain": "strain=TU-B-10",
                "accession": "GCA_000227465.1",
                "taxid": 96241,
                "species_taxid": 96241,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9996,
                "matched_fragments": 1350,
                "total_fragments": 1351,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Bacillus inaquosorum",
                "strain": "strain=KCTC 13429",
                "accession": "GCA_003148415.1",
                "taxid": 483913,
                "species_taxid": 483913,
                "relation_to_type": "type",
                "validated": true,
                "ani": 94.2307,
                "matched_fragments": 1251,
                "total_fragments": 1351,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacillus inaquosorum",
                "strain": "strain=KCTC 13429",
                "accession": "GCA_000332645.1",
                "taxid": 483913,
                "species_taxid": 483913,
                "relation_to_type": "type",
                "validated": true,
                "ani": 94.2054,
                "matched_fragments": 1249,
                "total_fragments": 1351,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacillus subtilis subsp. subtilis",
                "strain": "strain=168",
                "accession": "GCA_002009095.1",
                "taxid": 135461,
                "species_taxid": 1423,
                "relation_to_type": "type",
                "validated": true,
                "ani": 92.7178,
                "matched_fragments": 1228,
                "total_fragments": 1351,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacillus subtilis subsp. subtilis",
                "strain": "strain=168",
                "accession": "GCA_024917115.1",
                "taxid": 135461,
                "species_taxid": 1423,
                "relation_to_type": "type",
                "validated": true,
                "ani": 92.7127,
                "matched_fragments": 1232,
                "total_fragments": 1351,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacillus vallismortis",
                "strain": "strain=DV1-F-3",
                "accession": "GCA_000245315.1",
                "taxid": 72361,
                "species_taxid": 72361,
                "relation_to_type": "type",
                "validated": true,
                "ani": 92.3001,
                "matched_fragments": 1045,
                "total_fragments": 1351,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacillus tequilensis",
                "strain": "strain=NCTC13306",
                "accession": "GCA_900445435.1",
                "taxid": 227866,
                "species_taxid": 227866,
                "relation_to_type": "type",
                "validated": true,
                "ani": 92.0858,
                "matched_fragments": 988,
                "total_fragments": 1351,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacillus yapensis",
                "strain": "strain=XXST-01",
                "accession": "GCA_003966255.1",
                "taxid": 2492960,
                "species_taxid": 2492960,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8772,
                "matched_fragments": 52,
                "total_fragments": 1351,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacillus yapensis",
                "strain": "strain=XXST-01",
                "accession": "GCA_005280205.1",
                "taxid": 2492960,
                "species_taxid": 2492960,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8772,
                "matched_fragments": 52,
                "total_fragments": 1351,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000227465.1",
                "gtdb_species": "s__Bacillus spizizenii",
                "ani": 99.9996,
                "matched_fragments": 1350,
                "total_fragments": 1351,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.29",
                "min_intra_species_ani": "95.06",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 32,
                "status": "conclusive"
            },
            {
                "accession": "GCA_000332645.1",
                "gtdb_species": "s__Bacillus inaquosorum",
                "ani": 94.1991,
                "matched_fragments": 1250,
                "total_fragments": 1351,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.57",
                "min_intra_species_ani": "97.81",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 20,
                "status": "-"
            },
            {
                "accession": "GCF_004124315.1",
                "gtdb_species": "s__Bacillus cabrialesii",
                "ani": 93.4946,
                "matched_fragments": 1233,
                "total_fragments": 1351,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.72",
                "min_intra_species_ani": "96.66",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 11,
                "status": "-"
            },
            {
                "accession": "GCF_002153395.1",
                "gtdb_species": "s__Bacillus subtilis_G",
                "ani": 93.1014,
                "matched_fragments": 1221,
                "total_fragments": 1351,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.63",
                "min_intra_species_ani": "97.72",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_000009045.1",
                "gtdb_species": "s__Bacillus subtilis",
                "ani": 92.7231,
                "matched_fragments": 1236,
                "total_fragments": 1351,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.63",
                "min_intra_species_ani": "95.03",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 485,
                "status": "-"
            },
            {
                "accession": "GCF_004116955.1",
                "gtdb_species": "s__Bacillus vallismortis",
                "ani": 92.3367,
                "matched_fragments": 1167,
                "total_fragments": 1351,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.90",
                "min_intra_species_ani": "97.68",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCF_000507145.1",
                "gtdb_species": "s__Bacillus tequilensis",
                "ani": 92.2185,
                "matched_fragments": 1132,
                "total_fragments": 1351,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.71",
                "min_intra_species_ani": "97.42",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_001969815.1",
                "gtdb_species": "s__Bacillus swezeyi",
                "ani": 79.2361,
                "matched_fragments": 393,
                "total_fragments": 1351,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.68",
                "min_intra_species_ani": "96.91",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_002744245.1",
                "gtdb_species": "s__Bacillus pumilus_M",
                "ani": 78.3265,
                "matched_fragments": 208,
                "total_fragments": 1351,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900186955.1",
                "gtdb_species": "s__Bacillus pumilus",
                "ani": 78.3116,
                "matched_fragments": 203,
                "total_fragments": 1351,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.74",
                "min_intra_species_ani": "95.13",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 168,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.176,
        "cell_length": 0.387,
        "doubling_h": -0.134,
        "growth_tmp": 31.412,
        "optimum_tmp": 33.64,
        "optimum_ph": 7.746,
        "genome_size": 4544138.117,
        "gc_content": 40.577,
        "coding_genes": 4334.002,
        "rRNA16S_genes": 9.859,
        "tRNA_genes": 88.223,
        "gram_stain": 0.993,
        "sporulation": 0.975,
        "motility": 0.841,
        "range_salinity": 0.6,
        "facultative_respiration": 0.16,
        "anaerobic_respiration": 0.011,
        "aerobic_respiration": 0.827,
        "mesophilic_range_tmp": 0.928,
        "thermophilic_range_tmp": 0.053,
        "psychrophilic_range_tmp": 0.017,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Bacillus",
        "spizizenii"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}