{ "type": "genome", "identifier": "GCF_007990245.1", "organism": "Cellulomonas composti", "title": "Cellulomonas composti", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation", "publication": [ {} ], "properties": { "assembly_accession": "GCF_007990245.1", "bioproject": "PRJNA224116", "biosample": "SAMD00166262", "wgs_master": "BJWG00000000.1", "refseq_category": "reference genome", "taxid": "266130", "species_taxid": "266130", "organism_name": "Cellulomonas composti", "infraspecific_name": "strain=NBRC 100758", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/08/01", "asm_name": "ASM799024v1", "asm_submitter": "National Institute of Technology and Evaluation", "gbrs_paired_asm": "GCA_007990245.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/990/245/GCF_007990245.1_ASM799024v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3539423", "genome_size_ungapped": "3539423", "gc_percent": "73.000000", "replicon_count": "0", "scaffold_count": "34", "contig_count": "34", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_007990245.1-RS_2024_08_26", "annotation_date": "2024-08-26", "total_gene_count": "3143", "protein_coding_gene_count": "3064", "non_coding_gene_count": "51", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-08-01", "dateModified": "2019-08-01", "datePublished": "2019-08-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Cellulomonas composti" ], "sample_taxid": [ "266130" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea:Chung-Won" ], "sample_host_location_id": [], "data_size": "0.924 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3539423", "Number of Sequences": "34", "Longest Sequences (bp)": "568266", "N50 (bp)": "234329", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "73.0", "Number of CDSs": "3111", "Average Protein Length": "345.3", "Coding Ratio (%)": "91.1", "Number of rRNAs": "3", "Number of tRNAs": "51", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Cellulomonas composti", "strain": "strain=NBRC 100758", "accession": "GCA_007990245.1", "taxid": 266130, "species_taxid": 266130, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1163, "total_fragments": 1164, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Cellulomonas palmilytica", "strain": "strain=EW123", "accession": "GCA_021590045.1", "taxid": 2608402, "species_taxid": 2608402, "relation_to_type": "type", "validated": true, "ani": 83.2355, "matched_fragments": 813, "total_fragments": 1164, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas persica", "strain": "strain=NBRC 101101", "accession": "GCA_007989825.1", "taxid": 76861, "species_taxid": 76861, "relation_to_type": "type", "validated": true, "ani": 83.1952, "matched_fragments": 783, "total_fragments": 1164, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas uda", "strain": "strain=NBRC 3747", "accession": "GCA_006538705.1", "taxid": 1714, "species_taxid": 1714, "relation_to_type": "type", "validated": true, "ani": 83.1036, "matched_fragments": 758, "total_fragments": 1164, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas gelida", "strain": "strain=NBRC 3748", "accession": "GCA_006538725.1", "taxid": 1712, "species_taxid": 1712, "relation_to_type": "type", "validated": true, "ani": 83.0827, "matched_fragments": 771, "total_fragments": 1164, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas gelida", "strain": "strain=JCM 1490", "accession": "GCA_014647015.1", "taxid": 1712, "species_taxid": 1712, "relation_to_type": "type", "validated": true, "ani": 83.0454, "matched_fragments": 789, "total_fragments": 1164, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas gilvus", "strain": "strain=ATCC 13127", "accession": "GCA_000218545.1", "taxid": 11, "species_taxid": 11, "relation_to_type": "type", "validated": true, "ani": 83.0245, "matched_fragments": 757, "total_fragments": 1164, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas fulva", "strain": "strain=DKR-3", "accession": "GCA_018531375.1", "taxid": 2835530, "species_taxid": 2835530, "relation_to_type": "type", "validated": true, "ani": 82.8401, "matched_fragments": 781, "total_fragments": 1164, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas massiliensis", "strain": "strain=JC225", "accession": "GCA_000312005.1", "taxid": 1465811, "species_taxid": 1465811, "relation_to_type": "type", "validated": true, "ani": 81.8323, "matched_fragments": 672, "total_fragments": 1164, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas fimi", "strain": "strain=NCTC7547", "accession": "GCA_900637695.1", "taxid": 1708, "species_taxid": 1708, "relation_to_type": "type", "validated": true, "ani": 81.7771, "matched_fragments": 712, "total_fragments": 1164, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas biazotea", "strain": "strain=NBRC12680", "accession": "GCA_004306155.1", "taxid": 1709, "species_taxid": 1709, "relation_to_type": "type", "validated": true, "ani": 81.7549, "matched_fragments": 652, "total_fragments": 1164, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas fimi", "strain": "strain=ATCC 484", "accession": "GCA_000212695.1", "taxid": 1708, "species_taxid": 1708, "relation_to_type": "type", "validated": true, "ani": 81.7148, "matched_fragments": 729, "total_fragments": 1164, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas soli", "strain": "strain=DSM 24484", "accession": "GCA_013409305.1", "taxid": 931535, "species_taxid": 931535, "relation_to_type": "type", "validated": true, "ani": 80.9352, "matched_fragments": 669, "total_fragments": 1164, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas avistercoris", "strain": "strain=Sa3CUA2", "accession": "GCA_014836445.1", "taxid": 2762242, "species_taxid": 2762242, "relation_to_type": "type", "validated": true, "ani": 80.6118, "matched_fragments": 656, "total_fragments": 1164, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinotalea solisilvae", "strain": "strain=KACC 19191", "accession": "GCA_016464425.1", "taxid": 2072922, "species_taxid": 2072922, "relation_to_type": "type", "validated": true, "ani": 79.4568, "matched_fragments": 609, "total_fragments": 1164, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinotalea subterranea", "strain": "strain=HO-Ch2", "accession": "GCA_008364845.1", "taxid": 2607497, "species_taxid": 2607497, "relation_to_type": "type", "validated": true, "ani": 79.332, "matched_fragments": 547, "total_fragments": 1164, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_007990245.1", "gtdb_species": "s__Cellulomonas composti", "ani": 100.0, "matched_fragments": 1163, "total_fragments": 1164, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_007989825.1", "gtdb_species": "s__Cellulomonas persica", "ani": 83.2067, "matched_fragments": 782, "total_fragments": 1164, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_006538705.1", "gtdb_species": "s__Cellulomonas uda", "ani": 83.1493, "matched_fragments": 754, "total_fragments": 1164, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.69", "min_intra_species_ani": "98.01", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.90", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_006538725.1", "gtdb_species": "s__Cellulomonas gelida", "ani": 83.101, "matched_fragments": 770, "total_fragments": 1164, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.61", "min_intra_species_ani": "99.23", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.91", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_000218545.1", "gtdb_species": "s__Cellulomonas gilvus", "ani": 82.9792, "matched_fragments": 760, "total_fragments": 1164, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018531375.1", "gtdb_species": "s__Cellulomonas sp018531375", "ani": 82.8463, "matched_fragments": 781, "total_fragments": 1164, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000708885.1", "gtdb_species": "s__Cellulomonas sp000708885", "ani": 82.0645, "matched_fragments": 696, "total_fragments": 1164, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_012396155.1", "gtdb_species": "s__Cellulomonas septica", "ani": 81.9569, "matched_fragments": 451, "total_fragments": 1164, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000212695.1", "gtdb_species": "s__Cellulomonas fimi", "ani": 81.7384, "matched_fragments": 726, "total_fragments": 1164, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_000312005.1", "gtdb_species": "s__Cellulomonas massiliensis", "ani": 81.7329, "matched_fragments": 682, "total_fragments": 1164, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_004306155.1", "gtdb_species": "s__Cellulomonas biazotea", "ani": 81.7318, "matched_fragments": 653, "total_fragments": 1164, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014837175.1", "gtdb_species": "s__Cellulomonas sp014837175", "ani": 81.6117, "matched_fragments": 657, "total_fragments": 1164, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001552375.1", "gtdb_species": "s__Cellulomonas iranensis", "ani": 81.4423, "matched_fragments": 654, "total_fragments": 1164, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.21", "min_intra_species_ani": "97.89", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.88", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_001462455.1", "gtdb_species": "s__Cellulomonas sp001462455", "ani": 81.3122, "matched_fragments": 648, "total_fragments": 1164, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013409305.1", "gtdb_species": "s__Cellulomonas soli", "ani": 80.9602, "matched_fragments": 666, "total_fragments": 1164, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_004798685.1", "gtdb_species": "s__Cellulomonas shaoxiangyii", "ani": 80.5742, "matched_fragments": 637, "total_fragments": 1164, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": 0.019, "cell_length": 0.334, "doubling_h": null, "growth_tmp": 28.0, "optimum_tmp": 30.0, "optimum_ph": 7.15, "genome_size": 2410091.5, "gc_content": 72.991, "coding_genes": 3692.833, "rRNA16S_genes": 2.0, "tRNA_genes": 45.0, "gram_stain": 1.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Cellulomonas", "composti" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }