{ "type": "genome", "identifier": "GCF_007990775.1", "organism": "Deinococcus cellulosilyticus NBRC 106333 = KACC 11606", "title": "Deinococcus cellulosilyticus NBRC 106333 = KACC 11606", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation", "publication": [ {} ], "properties": { "assembly_accession": "GCF_007990775.1", "bioproject": "PRJNA224116", "biosample": "SAMD00169718", "wgs_master": "BJXB00000000.1", "refseq_category": "reference genome", "taxid": "1223518", "species_taxid": "401558", "organism_name": "Deinococcus cellulosilyticus NBRC 106333 = KACC 11606", "infraspecific_name": "strain=NBRC 106333", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/08/01", "asm_name": "ASM799077v1", "asm_submitter": "National Institute of Technology and Evaluation", "gbrs_paired_asm": "GCA_007990775.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/990/775/GCF_007990775.1_ASM799077v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6106829", "genome_size_ungapped": "6106829", "gc_percent": "56.500000", "replicon_count": "0", "scaffold_count": "97", "contig_count": "97", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_007990775.1-RS_2024_08_26", "annotation_date": "2024-08-26", "total_gene_count": "5912", "protein_coding_gene_count": "5806", "non_coding_gene_count": "70", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-08-01", "dateModified": "2019-08-01", "datePublished": "2019-08-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Deinococcus cellulosilyticus NBRC 106333 = KACC 11606" ], "sample_taxid": [ "1223518" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea:Jeju Island" ], "sample_host_location_id": [], "data_size": "1.711 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6106829", "Number of Sequences": "97", "Longest Sequences (bp)": "511064", "N50 (bp)": "176104", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "56.5", "Number of CDSs": "5844", "Average Protein Length": "304.7", "Coding Ratio (%)": "87.5", "Number of rRNAs": "3", "Number of tRNAs": "60", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Deinococcus cellulosilyticus", "strain": "strain=NBRC 106333", "accession": "GCA_007990775.1", "taxid": 401558, "species_taxid": 401558, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1983, "total_fragments": 1988, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Deinococcus roseus", "strain": "strain=JCM 14370", "accession": "GCA_014646895.1", "taxid": 392414, "species_taxid": 392414, "relation_to_type": "type", "validated": true, "ani": 82.8407, "matched_fragments": 1201, "total_fragments": 1988, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deinococcus misasensis", "strain": "strain=DSM 22328", "accession": "GCA_000745915.1", "taxid": 392413, "species_taxid": 392413, "relation_to_type": "type", "validated": true, "ani": 81.2944, "matched_fragments": 977, "total_fragments": 1988, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deinobacterium chartae", "strain": "strain=DSM 21458", "accession": "GCA_014202645.1", "taxid": 521158, "species_taxid": 521158, "relation_to_type": "type", "validated": true, "ani": 76.6751, "matched_fragments": 150, "total_fragments": 1988, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deinococcus aquaedulcis", "strain": "strain=SYSU M42101", "accession": "GCA_019693445.1", "taxid": 2840455, "species_taxid": 2840455, "relation_to_type": "type", "validated": true, "ani": 76.5646, "matched_fragments": 123, "total_fragments": 1988, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deinococcus aerophilus", "strain": "strain=JCM 15443", "accession": "GCA_014647075.1", "taxid": 522488, "species_taxid": 522488, "relation_to_type": "type", "validated": true, "ani": 76.5095, "matched_fragments": 117, "total_fragments": 1988, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deinococcus arenae", "strain": "strain=JCM 31047", "accession": "GCA_014647995.1", "taxid": 1452751, "species_taxid": 1452751, "relation_to_type": "type", "validated": true, "ani": 76.3415, "matched_fragments": 110, "total_fragments": 1988, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deinococcus sedimenti", "strain": "strain=JCM 31405", "accession": "GCA_014648135.1", "taxid": 1867090, "species_taxid": 1867090, "relation_to_type": "type", "validated": true, "ani": 76.2614, "matched_fragments": 118, "total_fragments": 1988, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deinococcus saudiensis", "strain": "strain=CGMCC 1.15089", "accession": "GCA_014640655.1", "taxid": 1765963, "species_taxid": 1765963, "relation_to_type": "type", "validated": true, "ani": 76.2315, "matched_fragments": 115, "total_fragments": 1988, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deinococcus radiotolerans", "strain": "strain=JCM 19173", "accession": "GCA_014647435.1", "taxid": 1309407, "species_taxid": 1309407, "relation_to_type": "type", "validated": true, "ani": 76.2007, "matched_fragments": 109, "total_fragments": 1988, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deinococcus fonticola", "strain": "strain=FeSDHB5-19", "accession": "GCA_004634215.1", "taxid": 2528713, "species_taxid": 2528713, "relation_to_type": "type", "validated": true, "ani": 76.1708, "matched_fragments": 115, "total_fragments": 1988, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deinococcus malanensis", "strain": "strain=JCM 30331", "accession": "GCA_014647655.1", "taxid": 1706855, "species_taxid": 1706855, "relation_to_type": "type", "validated": true, "ani": 76.0602, "matched_fragments": 108, "total_fragments": 1988, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deinococcus rubellus", "strain": "strain=Ant6", "accession": "GCA_025244745.1", "taxid": 1889240, "species_taxid": 1889240, "relation_to_type": "type", "validated": true, "ani": 76.0128, "matched_fragments": 79, "total_fragments": 1988, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deinococcus ficus", "strain": "strain=CC-FR2-10", "accession": "GCA_003444775.1", "taxid": 317577, "species_taxid": 317577, "relation_to_type": "type", "validated": true, "ani": 75.9627, "matched_fragments": 125, "total_fragments": 1988, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deinococcus alpinitundrae", "strain": "strain=LMG 24283", "accession": "GCA_009982895.1", "taxid": 468913, "species_taxid": 468913, "relation_to_type": "type", "validated": true, "ani": 75.8389, "matched_fragments": 92, "total_fragments": 1988, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_007990775.1", "gtdb_species": "s__Deinococcus_C cellulosilyticus", "ani": 100.0, "matched_fragments": 1983, "total_fragments": 1988, "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Deinococcaceae;g__Deinococcus_C", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_014646895.1", "gtdb_species": "s__Deinococcus_C roseus", "ani": 82.8191, "matched_fragments": 1205, "total_fragments": 1988, "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Deinococcaceae;g__Deinococcus_C", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000745915.1", "gtdb_species": "s__Deinococcus_C misasensis", "ani": 81.3086, "matched_fragments": 975, "total_fragments": 1988, "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Deinococcaceae;g__Deinococcus_C", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014202645.1", "gtdb_species": "s__Deinobacterium chartae", "ani": 76.6751, "matched_fragments": 150, "total_fragments": 1988, "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Deinococcaceae;g__Deinobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014647075.1", "gtdb_species": "s__Deinococcus aerophilus", "ani": 76.5095, "matched_fragments": 117, "total_fragments": 1988, "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Deinococcaceae;g__Deinococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001507665.1", "gtdb_species": "s__Deinococcus actinosclerus", "ani": 76.4568, "matched_fragments": 104, "total_fragments": 1988, "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Deinococcaceae;g__Deinococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.26", "min_intra_species_ani": "96.21", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_001485435.1", "gtdb_species": "s__Deinococcus grandis", "ani": 76.3016, "matched_fragments": 111, "total_fragments": 1988, "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Deinococcaceae;g__Deinococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.65", "min_intra_species_ani": "95.40", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.83", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_014653275.1", "gtdb_species": "s__Deinococcus piscis", "ani": 76.2878, "matched_fragments": 73, "total_fragments": 1988, "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Deinococcaceae;g__Deinococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014648135.1", "gtdb_species": "s__Deinococcus sedimenti", "ani": 76.2463, "matched_fragments": 119, "total_fragments": 1988, "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Deinococcaceae;g__Deinococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014647435.1", "gtdb_species": "s__Deinococcus radiotolerans", "ani": 76.2007, "matched_fragments": 109, "total_fragments": 1988, "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Deinococcaceae;g__Deinococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004634215.1", "gtdb_species": "s__Deinococcus fonticola", "ani": 76.1708, "matched_fragments": 115, "total_fragments": 1988, "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Deinococcaceae;g__Deinococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.54", "min_intra_species_ani": "96.54", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.85", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_014647655.1", "gtdb_species": "s__Deinococcus malanensis", "ani": 76.0602, "matched_fragments": 108, "total_fragments": 1988, "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Deinococcaceae;g__Deinococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002198095.1", "gtdb_species": "s__Deinococcus indicus", "ani": 76.0518, "matched_fragments": 130, "total_fragments": 1988, "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Deinococcaceae;g__Deinococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.28", "min_intra_species_ani": "99.28", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003444775.1", "gtdb_species": "s__Deinococcus ficus", "ani": 75.9404, "matched_fragments": 127, "total_fragments": 1988, "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Deinococcaceae;g__Deinococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.33", "min_intra_species_ani": "97.44", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.88", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_009982895.1", "gtdb_species": "s__Deinococcus alpinitundrae", "ani": 75.8241, "matched_fragments": 93, "total_fragments": 1988, "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Deinococcaceae;g__Deinococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": 0.146, "cell_length": 0.361, "doubling_h": 0.111, "growth_tmp": 29.0, "optimum_tmp": 30.0, "optimum_ph": 7.0, "genome_size": 6106829.0, "gc_content": 56.498, "coding_genes": 3268.576, "rRNA16S_genes": 3.545, "tRNA_genes": 48.236, "gram_stain": 1.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Deinococcus", "cellulosilyticus", "NBRC", "106333", "=", "KACC", "11606" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }