{
    "type": "genome",
    "identifier": "GCF_007990975.1",
    "organism": "Meiothermus hypogaeus NBRC 106114",
    "title": "Meiothermus hypogaeus NBRC 106114",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "National Institute of Technology and Evaluation",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_007990975.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00169735",
        "wgs_master": "BJXL00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1227553",
        "species_taxid": "884155",
        "organism_name": "Meiothermus hypogaeus NBRC 106114",
        "infraspecific_name": "strain=NBRC 106114",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/08/01",
        "asm_name": "ASM799097v1",
        "asm_submitter": "National Institute of Technology and Evaluation",
        "gbrs_paired_asm": "GCA_007990975.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/990/975/GCF_007990975.1_ASM799097v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3723227",
        "genome_size_ungapped": "3723227",
        "gc_percent": "61.000000",
        "replicon_count": "0",
        "scaffold_count": "272",
        "contig_count": "272",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_007990975.1-RS_2024_08_26",
        "annotation_date": "2024-08-26",
        "total_gene_count": "3640",
        "protein_coding_gene_count": "3561",
        "non_coding_gene_count": "50",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-08-01",
    "dateModified": "2019-08-01",
    "datePublished": "2019-08-01",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Meiothermus hypogaeus NBRC 106114"
        ],
        "sample_taxid": [
            "1227553"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Japan:Nagano"
        ],
        "sample_host_location_id": [],
        "data_size": "1.051 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3723227",
        "Number of Sequences": "272",
        "Longest Sequences (bp)": "106080",
        "N50 (bp)": "22939",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "61.2",
        "Number of CDSs": "3541",
        "Average Protein Length": "305.5",
        "Coding Ratio (%)": "87.2",
        "Number of rRNAs": "2",
        "Number of tRNAs": "46",
        "Number of CRISPRs": "11"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Meiothermus hypogaeus",
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                "accession": "GCA_007990975.1",
                "taxid": 884155,
                "species_taxid": 884155,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1103,
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Meiothermus hypogaeus",
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                "species_taxid": 884155,
                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Meiothermus ruber",
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                "accession": "GCA_000024425.1",
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                "species_taxid": 277,
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                "validated": true,
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                "matched_fragments": 693,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Meiothermus cerbereus",
                "strain": "strain=DSM 11376",
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                "taxid": 65552,
                "species_taxid": 65552,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 712,
                "total_fragments": 1120,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Meiothermus ruber",
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                "accession": "GCA_000376665.1",
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                "species_taxid": 277,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.4194,
                "matched_fragments": 695,
                "total_fragments": 1120,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_003574035.1",
                "gtdb_species": "s__Meiothermus hypogaeus",
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                "matched_fragments": 1061,
                "total_fragments": 1120,
                "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Thermaceae;g__Meiothermus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.94",
                "min_intra_species_ani": "99.94",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCF_017497985.1",
                "gtdb_species": "s__Meiothermus sp017497985",
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                "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Thermaceae;g__Meiothermus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_000482765.1",
                "gtdb_species": "s__Meiothermus taiwanensis",
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                "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Thermaceae;g__Meiothermus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.41",
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                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_000024425.1",
                "gtdb_species": "s__Meiothermus ruber",
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.09",
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                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_000620065.1",
                "gtdb_species": "s__Meiothermus cerbereus",
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                "matched_fragments": 711,
                "total_fragments": 1120,
                "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Thermaceae;g__Meiothermus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
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                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_011327565.1",
                "gtdb_species": "s__Meiothermus ruber_A",
                "ani": 81.898,
                "matched_fragments": 697,
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                "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Thermaceae;g__Meiothermus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.398,
        "cell_length": 0.23,
        "doubling_h": 0.229,
        "growth_tmp": 50.0,
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        "genome_size": 3723227.0,
        "gc_content": 61.188,
        "coding_genes": 3260.5,
        "rRNA16S_genes": 2.0,
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        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": 0.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
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        "mesophilic_range_tmp": 0.0,
        "thermophilic_range_tmp": 1.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
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    },
    "_genome_taxon": [
        "Meiothermus",
        "hypogaeus",
        "NBRC",
        "106114"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}