{ "type": "genome", "identifier": "GCF_007990995.1", "organism": "Meiothermus granaticius NBRC 107808", "title": "Meiothermus granaticius NBRC 107808", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation", "publication": [ {} ], "properties": { "assembly_accession": "GCF_007990995.1", "bioproject": "PRJNA224116", "biosample": "SAMD00169736", "wgs_master": "BJXM00000000.1", "refseq_category": "reference genome", "taxid": "1227551", "species_taxid": "863370", "organism_name": "Meiothermus granaticius NBRC 107808", "infraspecific_name": "strain=NBRC 107808", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/08/01", "asm_name": "ASM799099v1", "asm_submitter": "National Institute of Technology and Evaluation", "gbrs_paired_asm": "GCA_007990995.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/990/995/GCF_007990995.1_ASM799099v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3252286", "genome_size_ungapped": "3252286", "gc_percent": "63.000000", "replicon_count": "0", "scaffold_count": "59", "contig_count": "59", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_007990995.1-RS_2024_08_26", "annotation_date": "2024-08-26", "total_gene_count": "3288", "protein_coding_gene_count": "3215", "non_coding_gene_count": "49", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-08-01", "dateModified": "2019-08-01", "datePublished": "2019-08-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Meiothermus granaticius NBRC 107808" ], "sample_taxid": [ "1227551" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Portugal:Azores, Island of Sao Miguel, R65Furnas" ], "sample_host_location_id": [], "data_size": "0.911 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3252286", "Number of Sequences": "59", "Longest Sequences (bp)": "329130", "N50 (bp)": "164746", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "63.1", "Number of CDSs": "3191", "Average Protein Length": "311.3", "Coding Ratio (%)": "91.6", "Number of rRNAs": "2", "Number of tRNAs": "44", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Meiothermus granaticius", "strain": "strain=NBRC 107808", "accession": "GCA_007990995.1", "taxid": 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"below_threshold" }, { "organism_name": "Calidithermus terrae", "strain": "strain=DSM 26712", "accession": "GCA_003574345.1", "taxid": 1408545, "species_taxid": 1408545, "relation_to_type": "type", "validated": true, "ani": 77.8356, "matched_fragments": 331, "total_fragments": 1054, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Meiothermus rufus", "strain": "strain=DSM 22234", "accession": "GCA_000423425.1", "taxid": 604332, "species_taxid": 604332, "relation_to_type": "type", "validated": true, "ani": 77.5721, "matched_fragments": 262, "total_fragments": 1054, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermus igniterrae", "strain": "strain=ATCC 700962", "accession": "GCA_000376265.1", "taxid": 88189, "species_taxid": 88189, "relation_to_type": "type", "validated": true, "ani": 76.4263, "matched_fragments": 133, "total_fragments": 1054, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, 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