{ "type": "genome", "identifier": "GCF_007991115.1", "organism": "Neoasaia chiangmaiensis", "title": "Neoasaia chiangmaiensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation Biological Resource Center", "publication": [ {} ], "properties": { "assembly_accession": "GCF_007991115.1", "bioproject": "PRJNA224116", "biosample": "SAMD00169744", "wgs_master": "BJXS00000000.1", "refseq_category": "na", "taxid": "320497", "species_taxid": "320497", "organism_name": "Neoasaia chiangmaiensis", "infraspecific_name": "strain=NBRC 101099", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/07/31", "asm_name": "ASM799111v1", "asm_submitter": "National Institute of Technology and Evaluation Biological Resource Center", "gbrs_paired_asm": "GCA_007991115.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/991/115/GCF_007991115.1_ASM799111v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3382868", "genome_size_ungapped": "3382868", "gc_percent": "61.500000", "replicon_count": "0", "scaffold_count": "24", "contig_count": "24", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_007991115.1-RS_2024_12_16", "annotation_date": "2024-12-16", "total_gene_count": "3223", "protein_coding_gene_count": "3094", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-07-31", "dateModified": "2019-07-31", "datePublished": "2019-07-31", "_annotation": { "sample_count": 1, "sample_organism": [ "Neoasaia chiangmaiensis" ], "sample_taxid": [ "320497" ], "sample_host_organism": [ "Alpinia purpurata" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Thailand:Chaing-Mai" ], "sample_host_location_id": [], "data_size": "0.946 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3382868", "Number of Sequences": "24", "Longest Sequences (bp)": "548363", "N50 (bp)": "371028", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "61.5", "Number of CDSs": "3150", "Average Protein Length": "322.7", "Coding Ratio (%)": "90.2", "Number of rRNAs": "3", "Number of tRNAs": "49", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Neoasaia chiangmaiensis", "strain": "strain=NBRC 101099", "accession": "GCA_007991115.1", "taxid": 320497, "species_taxid": 320497, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1112, "total_fragments": 1113, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Neoasaia chiangmaiensis", "strain": "strain=NBRC 101099", "accession": "GCA_002005465.1", "taxid": 320497, "species_taxid": 320497, "relation_to_type": "type", "validated": true, "ani": 99.9998, "matched_fragments": 1112, "total_fragments": 1113, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Gluconacetobacter diazotrophicus", "strain": "strain=PAl 5", "accession": "GCA_000067045.1", "taxid": 33996, "species_taxid": 33996, "relation_to_type": "type", "validated": true, "ani": 79.0268, "matched_fragments": 271, "total_fragments": 1113, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidomonas methanolica", "strain": "strain=DSM 5432", "accession": "GCA_004346035.1", "taxid": 437, "species_taxid": 437, "relation_to_type": "type", "validated": true, "ani": 78.9518, "matched_fragments": 369, "total_fragments": 1113, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidomonas methanolica", "strain": "strain=NBRC 104435", "accession": "GCA_007988925.1", "taxid": 437, "species_taxid": 437, "relation_to_type": "type", "validated": true, "ani": 78.943, "matched_fragments": 364, "total_fragments": 1113, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tanticharoenia sakaeratensis", "strain": "strain=NBRC 103193", "accession": "GCA_000963885.1", "taxid": 444053, "species_taxid": 444053, "relation_to_type": "type", "validated": true, "ani": 78.9006, "matched_fragments": 293, "total_fragments": 1113, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidomonas methanolica", "strain": "strain=MB58", "accession": "GCA_000617865.1", "taxid": 437, "species_taxid": 437, "relation_to_type": "type", "validated": true, "ani": 78.8193, "matched_fragments": 348, "total_fragments": 1113, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gluconacetobacter diazotrophicus", "strain": "strain=PAl 5; ATCC 49037", "accession": "GCA_000021325.1", "taxid": 33996, "species_taxid": 33996, "relation_to_type": "type", "validated": true, "ani": 78.6457, "matched_fragments": 252, "total_fragments": 1113, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kozakia baliensis", "strain": "strain=DSM 14400", "accession": "GCA_001787335.1", "taxid": 153496, "species_taxid": 153496, "relation_to_type": "type", "validated": true, "ani": 78.5576, "matched_fragments": 304, "total_fragments": 1113, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kozakia baliensis", "strain": "strain=NBRC 16664", "accession": "GCA_007989365.1", "taxid": 153496, "species_taxid": 153496, "relation_to_type": "type", "validated": true, "ani": 78.4893, "matched_fragments": 305, "total_fragments": 1113, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gluconacetobacter diazotrophicus", "strain": "strain=LMG 7603", "accession": "GCA_014174315.1", "taxid": 33996, "species_taxid": 33996, "relation_to_type": "type", "validated": true, "ani": 78.4361, "matched_fragments": 256, "total_fragments": 1113, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gluconobacter potus", "strain": "strain=R-71646", "accession": "GCA_015244705.1", "taxid": 2724927, "species_taxid": 2724927, "relation_to_type": "type", "validated": true, "ani": 78.0025, "matched_fragments": 241, "total_fragments": 1113, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Asaia prunellae", "strain": "strain=JCM 25354", "accession": "GCA_000613885.1", "taxid": 610245, "species_taxid": 610245, "relation_to_type": "type", "validated": true, "ani": 77.8967, "matched_fragments": 172, "total_fragments": 1113, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gluconobacter aidae", "strain": "strain=AC10", "accession": "GCA_009547075.1", "taxid": 2662454, "species_taxid": 2662454, "relation_to_type": "type", "validated": true, "ani": 77.6883, "matched_fragments": 216, "total_fragments": 1113, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas aerophila", "strain": "strain=NBRC 108923", "accession": "GCA_014490485.1", "taxid": 1224513, "species_taxid": 1224513, "relation_to_type": "type", "validated": true, "ani": 76.5266, "matched_fragments": 101, "total_fragments": 1113, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidiphilium iwatense", "strain": "strain=KCTC 23505", "accession": "GCA_021556475.1", "taxid": 768198, "species_taxid": 768198, "relation_to_type": "type", "validated": true, "ani": 76.4018, "matched_fragments": 101, "total_fragments": 1113, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas alkaliterrae", "strain": "strain=DSM 25895", "accession": "GCA_014199195.1", "taxid": 1452450, "species_taxid": 1452450, "relation_to_type": "type", "validated": true, "ani": 76.283, "matched_fragments": 89, "total_fragments": 1113, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseococcus thiosulfatophilus", "strain": "strain=RB-3", "accession": "GCA_017311575.1", "taxid": 35813, "species_taxid": 35813, "relation_to_type": "type", "validated": true, "ani": 76.2278, "matched_fragments": 86, "total_fragments": 1113, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002005465.1", "gtdb_species": "s__Neoasaia chiangmaiensis", "ani": 99.9998, "matched_fragments": 1112, "total_fragments": 1113, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Neoasaia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_004346035.1", "gtdb_species": "s__Acidomonas methanolica", "ani": 78.9518, "matched_fragments": 369, "total_fragments": 1113, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Acidomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.93", "min_intra_species_ani": "99.80", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.98", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_000963885.1", "gtdb_species": "s__Tanticharoenia sakaeratensis", "ani": 78.9006, "matched_fragments": 293, "total_fragments": 1113, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Tanticharoenia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000021325.1", "gtdb_species": "s__Gluconacetobacter diazotrophicus", "ani": 78.6313, "matched_fragments": 254, "total_fragments": 1113, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Gluconacetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.14", "min_intra_species_ani": "98.86", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.85", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_001787335.1", "gtdb_species": "s__Kozakia baliensis", "ani": 78.5715, "matched_fragments": 303, "total_fragments": 1113, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Kozakia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.19", "min_intra_species_ani": "97.27", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.89", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_014635085.1", "gtdb_species": "s__Asaia siamensis", "ani": 78.3253, "matched_fragments": 245, "total_fragments": 1113, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Asaia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014174305.1", "gtdb_species": "s__Gluconacetobacter johannae", "ani": 78.1922, "matched_fragments": 232, "total_fragments": 1113, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Gluconacetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018811945.1", "gtdb_species": "s__Gluconobacter sp018811945", "ani": 78.1359, "matched_fragments": 232, "total_fragments": 1113, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Gluconobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_007988945.1", "gtdb_species": "s__Swaminathania salitolerans", "ani": 77.983, "matched_fragments": 249, "total_fragments": 1113, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Swaminathania", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018256155.1", "gtdb_species": "s__Gluconobacter sp018256155", "ani": 77.9255, "matched_fragments": 205, "total_fragments": 1113, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Gluconobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_006538885.1", "gtdb_species": "s__Gluconobacter roseus", "ani": 77.8932, "matched_fragments": 206, "total_fragments": 1113, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Gluconobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_014174155.1", "gtdb_species": "s__Gluconacetobacter tumulisoli", "ani": 77.8142, "matched_fragments": 246, "total_fragments": 1113, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Gluconacetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014174355.1", "gtdb_species": "s__Gluconacetobacter azotocaptans", "ani": 77.7946, "matched_fragments": 255, "total_fragments": 1113, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Gluconacetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.32", "min_intra_species_ani": "99.32", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_006539685.1", "gtdb_species": "s__Gluconobacter oxydans", "ani": 77.7329, "matched_fragments": 205, "total_fragments": 1113, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Gluconobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.14", "min_intra_species_ani": "96.18", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.85", "num_clustered_genomes": 13, "status": "-" }, { "accession": "GCF_009547075.1", "gtdb_species": "s__Gluconobacter sp009547075", "ani": 77.6883, "matched_fragments": 216, "total_fragments": 1113, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Gluconobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002723915.1", "gtdb_species": "s__Gluconobacter albidus", "ani": 77.4186, "matched_fragments": 191, "total_fragments": 1113, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Gluconobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.35", "min_intra_species_ani": "97.61", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.87", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_007988885.1", "gtdb_species": "s__Gluconobacter_B wancherniae", "ani": 77.1074, "matched_fragments": 112, "total_fragments": 1113, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Gluconobacter_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.01", "min_intra_species_ani": "98.51", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.90", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_014490445.1", "gtdb_species": "s__Roseomonas ludipueritiae", "ani": 76.5851, "matched_fragments": 99, "total_fragments": 1113, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Roseomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014490485.1", "gtdb_species": "s__Roseomonas aerophila", "ani": 76.5482, "matched_fragments": 100, "total_fragments": 1113, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Roseomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014199195.1", "gtdb_species": "s__Roseomonas_B alkaliterrae", "ani": 76.3025, "matched_fragments": 88, "total_fragments": 1113, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Roseomonas_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.89", "min_intra_species_ani": "99.89", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.97", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_017311575.1", "gtdb_species": "s__Roseococcus thiosulfatophilus", "ani": 76.2278, "matched_fragments": 86, "total_fragments": 1113, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Roseococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": 30.0, "optimum_ph": null, "genome_size": 3407860.0, "gc_content": 61.5, "coding_genes": 3026.5, "rRNA16S_genes": 4.0, "tRNA_genes": 54.0, "gram_stain": 0.0, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Neoasaia", "chiangmaiensis" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }