{ "type": "genome", "identifier": "GCF_007991235.1", "organism": "Pseudoalteromonas tetraodonis GFC", "title": "Pseudoalteromonas tetraodonis GFC", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation", "publication": [ {} ], "properties": { "assembly_accession": "GCF_007991235.1", "bioproject": "PRJNA224116", "biosample": "SAMD00169750", "wgs_master": "BJXY00000000.1", "refseq_category": "na", "taxid": "1315271", "species_taxid": "43659", "organism_name": "Pseudoalteromonas tetraodonis GFC", "infraspecific_name": "strain=NBRC 103034", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/07/31", "asm_name": "ASM799123v1", "asm_submitter": "National Institute of Technology and Evaluation", "gbrs_paired_asm": "GCA_007991235.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/991/235/GCF_007991235.1_ASM799123v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4056660", "genome_size_ungapped": "4056660", "gc_percent": "40.000000", "replicon_count": "0", "scaffold_count": "69", "contig_count": "69", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_007991235.1-RS_2024_12_23", "annotation_date": "2024-12-23", "total_gene_count": "3666", "protein_coding_gene_count": "3587", "non_coding_gene_count": "42", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-07-31", "dateModified": "2019-07-31", "datePublished": "2019-07-31", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudoalteromonas tetraodonis GFC" ], "sample_taxid": [ "1315271" ], "sample_host_organism": [ "Takifugu poecilonotus" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Japan" ], "sample_host_location_id": [], "data_size": "1.154 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4056660", "Number of Sequences": "69", "Longest Sequences (bp)": "347098", "N50 (bp)": "134407", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "40.2", "Number of CDSs": "3644", "Average Protein Length": "329.6", "Coding Ratio (%)": "88.8", "Number of rRNAs": "1", "Number of tRNAs": "36", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudoalteromonas tetraodonis", "strain": "strain=NBRC 103034", "accession": "GCA_007991235.1", "taxid": 43659, "species_taxid": 43659, "relation_to_type": "suspected-type", "validated": true, "ani": 100.0, "matched_fragments": 1313, "total_fragments": 1316, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Pseudoalteromonas tetraodonis", "strain": "strain=GFC", "accession": "GCA_002310835.1", "taxid": 43659, "species_taxid": 43659, "relation_to_type": "suspected-type", "validated": true, "ani": 99.9947, "matched_fragments": 1314, "total_fragments": 1316, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Pseudoalteromonas issachenkonii", "strain": "strain=KCTC 12958", "accession": "GCA_001455325.1", "taxid": 152297, "species_taxid": 152297, "relation_to_type": "suspected-type", "validated": true, "ani": 98.2844, "matched_fragments": 1225, "total_fragments": 1316, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Pseudoalteromonas issachenkonii", "strain": "strain=KMM 3549", "accession": "GCA_002310795.1", "taxid": 152297, "species_taxid": 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"validated": true, "ani": 81.2006, "matched_fragments": 641, "total_fragments": 1316, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella basaltis", "strain": "strain=KCTC 22121", "accession": "GCA_023283885.1", "taxid": 472183, "species_taxid": 472183, "relation_to_type": "type", "validated": true, "ani": 76.4652, "matched_fragments": 66, "total_fragments": 1316, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella inventionis", "strain": "strain=KCTC 42807", "accession": "GCA_023283595.1", "taxid": 1738770, "species_taxid": 1738770, "relation_to_type": "type", "validated": true, "ani": 76.2622, "matched_fragments": 62, "total_fragments": 1316, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella psychromarinicola", "strain": "strain=M2", "accession": "GCA_003855155.1", "taxid": 2487742, "species_taxid": 2487742, "relation_to_type": "type", "validated": true, "ani": 76.0153, "matched_fragments": 58, "total_fragments": 1316, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002310835.1", "gtdb_species": "s__Pseudoalteromonas tetraodonis", "ani": 99.9947, "matched_fragments": 1314, "total_fragments": 1316, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Pseudoalteromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.76", "min_intra_species_ani": "96.28", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.84", "num_clustered_genomes": 28, "status": "conclusive" }, { "accession": "GCA_018402495.1", "gtdb_species": "s__Pseudoalteromonas sp018402495", "ani": 92.6027, "matched_fragments": 1023, "total_fragments": 1316, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Pseudoalteromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000238275.3", "gtdb_species": "s__Pseudoalteromonas undina", "ani": 90.7582, "matched_fragments": 1144, "total_fragments": 1316, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Pseudoalteromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.26", "min_intra_species_ani": "96.09", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.86", "num_clustered_genomes": 14, "status": "-" }, { "accession": "GCF_004328665.1", "gtdb_species": "s__Pseudoalteromonas sp001974855", "ani": 90.4004, "matched_fragments": 1095, "total_fragments": 1316, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Pseudoalteromonas", 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"optimum_ph": 7.588, "genome_size": 3984328.25, "gc_content": 40.293, "coding_genes": 3584.0, "rRNA16S_genes": 8.0, "tRNA_genes": 112.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.941, "range_salinity": 0.8, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Pseudoalteromonas", "tetraodonis", "GFC" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }