{
    "type": "genome",
    "identifier": "GCF_007991315.1",
    "organism": "Alkalibacterium pelagium",
    "title": "Alkalibacterium pelagium",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "National Institute of Technology and Evaluation",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_007991315.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00170744",
        "wgs_master": "BJYC00000000.1",
        "refseq_category": "reference genome",
        "taxid": "426702",
        "species_taxid": "426702",
        "organism_name": "Alkalibacterium pelagium",
        "infraspecific_name": "strain=NBRC 103242",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/07/31",
        "asm_name": "ASM799131v1",
        "asm_submitter": "National Institute of Technology and Evaluation",
        "gbrs_paired_asm": "GCA_007991315.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/991/315/GCF_007991315.1_ASM799131v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2617530",
        "genome_size_ungapped": "2617530",
        "gc_percent": "42.500000",
        "replicon_count": "0",
        "scaffold_count": "45",
        "contig_count": "45",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_007991315.1-RS_2024_08_26",
        "annotation_date": "2024-08-26",
        "total_gene_count": "2454",
        "protein_coding_gene_count": "2385",
        "non_coding_gene_count": "47",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-07-31",
    "dateModified": "2019-07-31",
    "datePublished": "2019-07-31",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Alkalibacterium pelagium"
        ],
        "sample_taxid": [
            "426702"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Thailand:Trat, Chang Island"
        ],
        "sample_host_location_id": [],
        "data_size": "0.747 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2617530",
        "Number of Sequences": "45",
        "Longest Sequences (bp)": "312799",
        "N50 (bp)": "135282",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "42.5",
        "Number of CDSs": "2403",
        "Average Protein Length": "312.6",
        "Coding Ratio (%)": "86.1",
        "Number of rRNAs": "3",
        "Number of tRNAs": "37",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Alkalibacterium pelagium",
                "strain": "strain=NBRC 103242",
                "accession": "GCA_007991315.1",
                "taxid": 426702,
                "species_taxid": 426702,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
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                "total_fragments": 851,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Alkalibacterium pelagium",
                "strain": "strain=DSM 19183",
                "accession": "GCA_900109325.1",
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                "species_taxid": 426702,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9989,
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                "total_fragments": 851,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Alkalibacterium thalassium",
                "strain": "strain=DSM 19181",
                "accession": "GCA_900101165.1",
                "taxid": 426701,
                "species_taxid": 426701,
                "relation_to_type": "type",
                "validated": true,
                "ani": 91.3219,
                "matched_fragments": 600,
                "total_fragments": 851,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Alkalibacterium olivapovliticus",
                "strain": "strain=DSM 13175",
                "accession": "GCA_003003275.1",
                "taxid": 99907,
                "species_taxid": 99907,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.9808,
                "matched_fragments": 251,
                "total_fragments": 851,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Alkalibacterium putridalgicola",
                "strain": "strain=DSM 19182",
                "accession": "GCA_900109825.1",
                "taxid": 426703,
                "species_taxid": 426703,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.5176,
                "matched_fragments": 153,
                "total_fragments": 851,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Alkalibacterium subtropicum",
                "strain": "strain=DSM 23664",
                "accession": "GCA_900112455.1",
                "taxid": 753702,
                "species_taxid": 753702,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.4907,
                "matched_fragments": 138,
                "total_fragments": 851,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900109325.1",
                "gtdb_species": "s__Alkalibacterium pelagium",
                "ani": 99.9989,
                "matched_fragments": 849,
                "total_fragments": 851,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Carnobacteriaceae;g__Alkalibacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
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            },
            {
                "accession": "GCF_900101165.1",
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                "matched_fragments": 600,
                "total_fragments": 851,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Carnobacteriaceae;g__Alkalibacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003003275.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Carnobacteriaceae;g__Alkalibacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000585255.1",
                "gtdb_species": "s__Alkalibacterium sp000585255",
                "ani": 78.6629,
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                "total_fragments": 851,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Carnobacteriaceae;g__Alkalibacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            },
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Carnobacteriaceae;g__Alkalibacterium",
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            },
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_001885615.1",
                "gtdb_species": "s__Alkalibacterium sp001885615",
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                "matched_fragments": 105,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Carnobacteriaceae;g__Alkalibacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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                "status": "-"
            },
            {
                "accession": "GCF_017599325.1",
                "gtdb_species": "s__Marinilactibacillus sp017599325",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Carnobacteriaceae;g__Marinilactibacillus",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.222,
        "cell_length": 0.653,
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        "growth_tmp": 28.0,
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        "gc_content": null,
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        "rRNA16S_genes": null,
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        "gram_stain": 1.0,
        "sporulation": 0.0,
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        "range_salinity": null,
        "facultative_respiration": 0.0,
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        "mesophilic_range_tmp": null,
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        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
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    "_genome_taxon": [
        "Alkalibacterium",
        "pelagium"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}