{ "type": "genome", "identifier": "GCF_007991375.1", "organism": "Acetobacter nitrogenifigens DSM 23921 = NBRC 105050", "title": "Acetobacter nitrogenifigens DSM 23921 = NBRC 105050", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation Biological Resource Center", "publication": [ {} ], "properties": { "assembly_accession": "GCF_007991375.1", "bioproject": "PRJNA224116", "biosample": "SAMD00170748", "wgs_master": "BJYF00000000.1", "refseq_category": "reference genome", "taxid": "1120919", "species_taxid": "285268", "organism_name": "Acetobacter nitrogenifigens DSM 23921 = NBRC 105050", "infraspecific_name": "strain=NBRC 105050", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/07/31", "asm_name": "ASM799137v1", "asm_submitter": "National Institute of Technology and Evaluation Biological Resource Center", "gbrs_paired_asm": "GCA_007991375.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/991/375/GCF_007991375.1_ASM799137v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4241307", "genome_size_ungapped": "4241307", "gc_percent": "60.500000", "replicon_count": "0", "scaffold_count": "113", "contig_count": "113", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_007991375.1-RS_2024_12_16", "annotation_date": "2024-12-16", "total_gene_count": "3808", "protein_coding_gene_count": "3673", "non_coding_gene_count": "50", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-07-31", "dateModified": "2019-07-31", "datePublished": "2019-07-31", "_annotation": { "sample_count": 1, "sample_organism": [ "Acetobacter nitrogenifigens DSM 23921 = NBRC 105050" ], "sample_taxid": [ "1120919" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "India" ], "sample_host_location_id": [], "data_size": "1.200 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4241307", "Number of Sequences": "113", "Longest Sequences (bp)": "606333", "N50 (bp)": "174239", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "60.5", "Number of CDSs": "3660", "Average Protein Length": "319.1", "Coding Ratio (%)": "82.6", "Number of rRNAs": "3", "Number of tRNAs": "44", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Acetobacter nitrogenifigens", "strain": "strain=NBRC 105050", "accession": "GCA_007991375.1", "taxid": 285268, "species_taxid": 285268, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1362, "total_fragments": 1365, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Acetobacter nitrogenifigens", "strain": "strain=DSM 23921", "accession": "GCA_000429165.1", "taxid": 285268, "species_taxid": 285268, "relation_to_type": "type", "validated": true, "ani": 99.9962, "matched_fragments": 1365, "total_fragments": 1365, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Acetobacter sacchari", "strain": "strain=TBRC 11175", "accession": "GCA_017377715.1", "taxid": 2661687, "species_taxid": 2661687, "relation_to_type": "type", "validated": true, "ani": 92.8325, "matched_fragments": 1191, "total_fragments": 1365, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acetobacter aceti", "strain": "strain=DSM 3508", "accession": "GCA_004341595.1", "taxid": 435, "species_taxid": 435, "relation_to_type": "type", "validated": true, "ani": 78.6717, "matched_fragments": 250, "total_fragments": 1365, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acetobacter aceti", "strain": "strain=NBRC 14818", "accession": "GCA_000193495.2", "taxid": 435, "species_taxid": 435, "relation_to_type": "type", "validated": true, "ani": 78.585, "matched_fragments": 251, "total_fragments": 1365, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gluconacetobacter diazotrophicus", "strain": "strain=PAl 5; ATCC 49037", "accession": "GCA_000021325.1", "taxid": 33996, "species_taxid": 33996, "relation_to_type": "type", "validated": true, "ani": 78.4212, "matched_fragments": 250, "total_fragments": 1365, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gluconacetobacter diazotrophicus", "strain": "strain=LMG 7603", "accession": "GCA_014174315.1", "taxid": 33996, "species_taxid": 33996, "relation_to_type": "type", "validated": true, "ani": 78.3968, "matched_fragments": 252, "total_fragments": 1365, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acetobacter fallax", "strain": "strain=LMG 1636", "accession": "GCA_011516735.1", "taxid": 1737473, "species_taxid": 1737473, "relation_to_type": "type", "validated": true, "ani": 78.3545, "matched_fragments": 240, "total_fragments": 1365, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gluconacetobacter liquefaciens", "strain": "strain=LMG 1382", "accession": "GCA_014174285.1", "taxid": 89584, "species_taxid": 89584, "relation_to_type": "type", "validated": true, "ani": 78.023, "matched_fragments": 259, "total_fragments": 1365, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gluconacetobacter liquefaciens", "strain": "strain=NBRC 12388", "accession": "GCA_006539085.1", "taxid": 89584, "species_taxid": 89584, "relation_to_type": "type", "validated": true, "ani": 78.0199, "matched_fragments": 250, "total_fragments": 1365, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gluconobacter aidae", "strain": "strain=AC10", "accession": "GCA_009547075.1", "taxid": 2662454, "species_taxid": 2662454, "relation_to_type": "type", "validated": true, "ani": 77.9846, "matched_fragments": 132, "total_fragments": 1365, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Komagataeibacter xylinus", "strain": "strain=LMG 1515", "accession": "GCA_003207915.1", "taxid": 28448, "species_taxid": 28448, "relation_to_type": "suspected-type", "validated": true, "ani": 77.7738, "matched_fragments": 180, "total_fragments": 1365, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Komagataeibacter xylinus", "strain": "strain=NBRC 15237", "accession": "GCA_001571345.1", "taxid": 28448, "species_taxid": 28448, "relation_to_type": "suspected-type", "validated": true, "ani": 77.7511, "matched_fragments": 182, "total_fragments": 1365, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Komagataeibacter melaceti", "strain": "strain=AV382", "accession": "GCA_003403295.1", "taxid": 2766577, "species_taxid": 2766577, "relation_to_type": "type", "validated": true, "ani": 77.7496, "matched_fragments": 191, "total_fragments": 1365, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseococcus pinisoli", "strain": "strain=XZZS9", "accession": "GCA_018413645.1", "taxid": 2835040, "species_taxid": 2835040, "relation_to_type": "type", "validated": true, "ani": 77.0783, "matched_fragments": 86, "total_fragments": 1365, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovastum atsumiense", "strain": "strain=G2-11", "accession": "GCA_937425535.1", "taxid": 504468, "species_taxid": 504468, "relation_to_type": "type", "validated": true, "ani": 76.6723, "matched_fragments": 150, "total_fragments": 1365, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseococcus microcysteis", "strain": "strain=NIBR12", "accession": "GCA_014764365.1", "taxid": 2771361, "species_taxid": 2771361, "relation_to_type": "type", "validated": true, "ani": 76.6399, "matched_fragments": 82, "total_fragments": 1365, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseococcus thiosulfatophilus", "strain": "strain=RB-3", "accession": "GCA_017311575.1", "taxid": 35813, "species_taxid": 35813, "relation_to_type": "type", "validated": true, "ani": 76.605, "matched_fragments": 83, "total_fragments": 1365, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000429165.1", "gtdb_species": "s__Acetobacter nitrogenifigens", "ani": 99.9962, "matched_fragments": 1365, "total_fragments": 1365, "gtdb_taxonomy": 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