{ "type": "genome", "identifier": "GCF_007991455.1", "organism": "Chryseobacterium hagamense", "title": "Chryseobacterium hagamense", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation Biological Resource Center", "publication": [ {} ], "properties": { "assembly_accession": "GCF_007991455.1", "bioproject": "PRJNA224116", "biosample": "SAMD00170752", "wgs_master": "BJYJ00000000.1", "refseq_category": "reference genome", "taxid": "395935", "species_taxid": "395935", "organism_name": "Chryseobacterium hagamense", "infraspecific_name": "strain=NBRC 105253", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/07/31", "asm_name": "ASM799145v1", "asm_submitter": "National Institute of Technology and Evaluation Biological Resource Center", "gbrs_paired_asm": "GCA_007991455.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/991/455/GCF_007991455.1_ASM799145v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4669096", "genome_size_ungapped": "4669096", "gc_percent": "42.000000", "replicon_count": "0", "scaffold_count": "102", "contig_count": "102", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_007991455.1-RS_2024_09_09", "annotation_date": "2024-09-09", "total_gene_count": "4145", "protein_coding_gene_count": "4049", "non_coding_gene_count": "60", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-07-31", "dateModified": "2019-07-31", "datePublished": "2019-07-31", "_annotation": { "sample_count": 1, "sample_organism": [ "Chryseobacterium hagamense" ], "sample_taxid": [ "395935" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea:Taean" ], "sample_host_location_id": [], "data_size": "1.320 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4669096", "Number of Sequences": "102", "Longest Sequences (bp)": "662762", "N50 (bp)": "173325", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "41.8", "Number of CDSs": "4006", "Average Protein Length": "322.9", "Coding Ratio (%)": "83.1", "Number of rRNAs": "3", "Number of tRNAs": "53", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Chryseobacterium hagamense", "strain": "strain=NBRC 105253", "accession": "GCA_007991455.1", "taxid": 395935, "species_taxid": 395935, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1504, "total_fragments": 1509, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Chryseobacterium gambrini", "strain": "strain=DSM 18014", "accession": "GCA_900156825.1", "taxid": 373672, "species_taxid": 373672, "relation_to_type": "type", "validated": true, "ani": 80.4223, "matched_fragments": 785, "total_fragments": 1509, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium mucoviscidosis", "strain": "strain=VT16-26", "accession": "GCA_002177115.1", "taxid": 1945581, "species_taxid": 1945581, "relation_to_type": "type", "validated": true, "ani": 80.3675, "matched_fragments": 767, "total_fragments": 1509, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium hispalense", "strain": "strain=DSM 25574", "accession": "GCA_000708615.2", "taxid": 1453492, "species_taxid": 1453492, "relation_to_type": "type", "validated": true, "ani": 79.8829, "matched_fragments": 677, "total_fragments": 1509, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium arachidis", "strain": "strain=DSM 27619", "accession": "GCA_900129245.1", "taxid": 1416778, "species_taxid": 1416778, "relation_to_type": "type", "validated": true, "ani": 79.8501, "matched_fragments": 717, "total_fragments": 1509, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium cheonjiense", "strain": "strain=RJ-7-14", "accession": "GCA_012927265.1", "taxid": 2728845, "species_taxid": 2728845, "relation_to_type": "type", "validated": true, "ani": 79.8144, "matched_fragments": 694, "total_fragments": 1509, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium daeguense", "strain": "strain=DSM 19388", "accession": "GCA_000430825.1", "taxid": 412438, "species_taxid": 412438, "relation_to_type": "type", "validated": true, "ani": 79.8037, "matched_fragments": 615, "total_fragments": 1509, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium taeanense", "strain": "strain=DSM 17071", "accession": "GCA_900099685.1", "taxid": 311334, "species_taxid": 311334, "relation_to_type": "type", "validated": true, "ani": 79.7797, "matched_fragments": 649, "total_fragments": 1509, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium takakiae", "strain": "strain=DSM 26898", "accession": "GCA_900129385.1", "taxid": 1302685, "species_taxid": 1302685, "relation_to_type": "type", "validated": true, "ani": 79.7196, "matched_fragments": 688, "total_fragments": 1509, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium camelliae", "strain": "strain=Dolsongi-HT1", "accession": "GCA_002770595.1", "taxid": 1265445, "species_taxid": 1265445, "relation_to_type": "type", "validated": true, "ani": 79.5605, "matched_fragments": 627, "total_fragments": 1509, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium arthrosphaerae", "strain": "strain=CC-VM-7", "accession": "GCA_001684965.1", "taxid": 651561, "species_taxid": 651561, "relation_to_type": "type", "validated": true, "ani": 78.9949, "matched_fragments": 575, "total_fragments": 1509, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium oleae", "strain": "strain=DSM 25575", "accession": "GCA_900115055.1", "taxid": 491207, "species_taxid": 491207, "relation_to_type": "type", "validated": true, "ani": 78.9325, "matched_fragments": 542, "total_fragments": 1509, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium shigense", "strain": "strain=DSM 17126", "accession": "GCA_002943655.1", "taxid": 297244, "species_taxid": 297244, "relation_to_type": "type", "validated": true, "ani": 78.9212, "matched_fragments": 520, "total_fragments": 1509, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium shigense", "strain": "strain=DSM 17126", "accession": "GCA_900156575.1", "taxid": 297244, "species_taxid": 297244, "relation_to_type": "type", "validated": true, "ani": 78.9133, "matched_fragments": 516, "total_fragments": 1509, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium schmidteae", "strain": "strain=Marseille-P9602", "accession": "GCA_903166575.1", "taxid": 2730404, "species_taxid": 2730404, "relation_to_type": "type", "validated": true, "ani": 78.218, "matched_fragments": 404, "total_fragments": 1509, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_007991455.1", "gtdb_species": "s__Chryseobacterium hagamense", "ani": 100.0, "matched_fragments": 1504, "total_fragments": 1509, "gtdb_taxonomy": 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