{ "type": "genome", "identifier": "GCF_007991475.1", "organism": "Actinotalea fermentans", "title": "Actinotalea fermentans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation Biological Resource Center", "publication": [ {} ], "properties": { "assembly_accession": "GCF_007991475.1", "bioproject": "PRJNA224116", "biosample": "SAMD00170753", "wgs_master": "BJYK00000000.1", "refseq_category": "reference genome", "taxid": "43671", "species_taxid": "43671", "organism_name": "Actinotalea fermentans", "infraspecific_name": "strain=NBRC 105374", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/07/31", "asm_name": "ASM799147v1", "asm_submitter": "National Institute of Technology and Evaluation Biological Resource Center", "gbrs_paired_asm": "GCA_007991475.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/991/475/GCF_007991475.1_ASM799147v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3737518", "genome_size_ungapped": "3737518", "gc_percent": "74.000000", "replicon_count": "0", "scaffold_count": "22", "contig_count": "22", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_007991475.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "3466", "protein_coding_gene_count": "3395", "non_coding_gene_count": "51", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-07-31", "dateModified": "2019-07-31", "datePublished": "2019-07-31", "_annotation": { "sample_count": 1, "sample_organism": [ "Actinotalea fermentans" ], "sample_taxid": [ "43671" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "France" ], "sample_host_location_id": [], "data_size": "0.977 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3737518", "Number of Sequences": "22", "Longest Sequences (bp)": "1384045", "N50 (bp)": "665556", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "74.1", "Number of CDSs": "3422", "Average Protein Length": "333.9", "Coding Ratio (%)": "91.7", "Number of rRNAs": "3", "Number of tRNAs": "55", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Cellulomonas carbonis", "strain": "strain=T26", "accession": "GCA_000767175.1", "taxid": 1386092, "species_taxid": 1386092, "relation_to_type": "type", "validated": true, "ani": 80.132, "matched_fragments": 596, "total_fragments": 1235, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinotalea solisilvae", "strain": "strain=KACC 19191", "accession": "GCA_016464425.1", "taxid": 2072922, "species_taxid": 2072922, "relation_to_type": "type", "validated": true, "ani": 80.0697, "matched_fragments": 689, "total_fragments": 1235, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas carbonis", "strain": "strain=CGMCC 1.10786", "accession": "GCA_014636275.1", "taxid": 1386092, "species_taxid": 1386092, "relation_to_type": "type", "validated": true, "ani": 80.0011, "matched_fragments": 660, "total_fragments": 1235, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinotalea subterranea", "strain": "strain=HO-Ch2", "accession": "GCA_008364845.1", "taxid": 2607497, "species_taxid": 2607497, "relation_to_type": "type", "validated": true, "ani": 79.9951, "matched_fragments": 676, "total_fragments": 1235, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas gelida", "strain": "strain=NBRC 3748", "accession": "GCA_006538725.1", "taxid": 1712, "species_taxid": 1712, "relation_to_type": "type", "validated": true, "ani": 79.2577, "matched_fragments": 560, "total_fragments": 1235, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas persica", "strain": "strain=NBRC 101101", "accession": "GCA_007989825.1", "taxid": 76861, "species_taxid": 76861, "relation_to_type": "type", "validated": true, "ani": 79.2421, "matched_fragments": 554, "total_fragments": 1235, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas gelida", "strain": "strain=JCM 1490", "accession": "GCA_014647015.1", "taxid": 1712, "species_taxid": 1712, "relation_to_type": "type", "validated": true, "ani": 79.24, "matched_fragments": 567, "total_fragments": 1235, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas hominis", "strain": "strain=DSM 9581", "accession": "GCA_014201095.1", "taxid": 156981, "species_taxid": 156981, "relation_to_type": "suspected-type", "validated": true, "ani": 79.079, "matched_fragments": 587, "total_fragments": 1235, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas massiliensis", "strain": "strain=JC225", "accession": "GCA_000312005.1", "taxid": 1465811, "species_taxid": 1465811, "relation_to_type": "type", "validated": true, "ani": 79.0691, "matched_fragments": 543, "total_fragments": 1235, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas palmilytica", "strain": "strain=EW123", "accession": "GCA_021590045.1", "taxid": 2608402, "species_taxid": 2608402, "relation_to_type": "type", "validated": true, "ani": 78.9661, "matched_fragments": 594, "total_fragments": 1235, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas telluris", "strain": "strain=CPCC 204705", "accession": "GCA_004886325.1", "taxid": 2306636, "species_taxid": 2306636, "relation_to_type": "type", "validated": true, "ani": 78.9491, "matched_fragments": 587, "total_fragments": 1235, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas hominis", "strain": "strain=NBRC 16055", "accession": "GCA_007989225.1", "taxid": 156981, "species_taxid": 156981, "relation_to_type": "suspected-type", "validated": true, "ani": 78.9391, "matched_fragments": 567, "total_fragments": 1235, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas iranensis", "strain": "strain=NBRC 101100", "accession": "GCA_001552375.1", "taxid": 76862, "species_taxid": 76862, "relation_to_type": "type", "validated": true, "ani": 78.8987, "matched_fragments": 593, "total_fragments": 1235, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas fulva", "strain": "strain=DKR-3", "accession": "GCA_018531375.1", "taxid": 2835530, "species_taxid": 2835530, "relation_to_type": "type", "validated": true, "ani": 78.8172, "matched_fragments": 560, "total_fragments": 1235, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas avistercoris", "strain": "strain=Sa3CUA2", "accession": "GCA_014836445.1", "taxid": 2762242, "species_taxid": 2762242, "relation_to_type": "type", "validated": true, "ani": 78.7274, "matched_fragments": 573, "total_fragments": 1235, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oerskovia turbata", "strain": "strain=JCM3160", "accession": "GCA_004121315.1", "taxid": 1713, "species_taxid": 1713, "relation_to_type": "type", "validated": true, "ani": 78.6331, "matched_fragments": 465, "total_fragments": 1235, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sediminihabitans luteus", "strain": "strain=NBRC 108568", "accession": "GCA_016863455.1", "taxid": 1138585, "species_taxid": 1138585, "relation_to_type": "type", "validated": true, "ani": 78.5203, "matched_fragments": 498, "total_fragments": 1235, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sediminihabitans luteus", "strain": "strain=DSM 25478", "accession": "GCA_002797595.1", "taxid": 1138585, "species_taxid": 1138585, "relation_to_type": "type", "validated": true, "ani": 78.4755, "matched_fragments": 497, "total_fragments": 1235, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oerskovia enterophila", "strain": "strain=DSM 43852", "accession": "GCA_001692445.1", "taxid": 43678, "species_taxid": 43678, "relation_to_type": "type", "validated": true, "ani": 78.3418, "matched_fragments": 489, "total_fragments": 1235, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oerskovia merdavium", "strain": "strain=Sa2CUA9", "accession": "GCA_014836755.1", "taxid": 2762227, "species_taxid": 2762227, "relation_to_type": "type", "validated": true, "ani": 78.2893, "matched_fragments": 482, "total_fragments": 1235, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sanguibacter keddieii", "strain": "strain=DSM 10542", "accession": "GCA_000024925.1", "taxid": 60920, "species_taxid": 60920, "relation_to_type": "type", "validated": true, "ani": 78.1083, "matched_fragments": 476, "total_fragments": 1235, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Demequina rhizosphaerae", "strain": "strain=NBRC 109397", "accession": "GCA_000971255.1", "taxid": 1638985, "species_taxid": 1638985, "relation_to_type": "type", "validated": true, "ani": 77.8769, "matched_fragments": 370, "total_fragments": 1235, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Demequina maris", "strain": "strain=NBRC 109392", "accession": "GCA_000971155.1", "taxid": 1638982, "species_taxid": 1638982, "relation_to_type": "type", "validated": true, "ani": 77.8469, "matched_fragments": 377, "total_fragments": 1235, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Demequina phytophila", "strain": "strain=NBRC 109391", "accession": "GCA_000971135.1", "taxid": 1638981, "species_taxid": 1638981, "relation_to_type": "type", "validated": true, "ani": 77.7101, "matched_fragments": 338, "total_fragments": 1235, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Demequina pelophila", "strain": "strain=NBRC 109393", "accession": "GCA_000971175.1", "taxid": 1638984, "species_taxid": 1638984, "relation_to_type": "type", "validated": true, "ani": 77.651, "matched_fragments": 329, "total_fragments": 1235, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Demequina salsinemoris", "strain": "strain=NBRC 105323", "accession": "GCA_000974805.1", "taxid": 577470, "species_taxid": 577470, "relation_to_type": "type", "validated": true, "ani": 77.6235, "matched_fragments": 336, "total_fragments": 1235, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_000767215.1", "gtdb_species": "s__Actinotalea fermentans", "ani": 99.6229, "matched_fragments": 852, "total_fragments": 1235, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Actinotalea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCA_012514545.1", "gtdb_species": "s__Actinotalea sp012514545", "ani": 82.909, "matched_fragments": 564, "total_fragments": 1235, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Actinotalea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014042015.1", "gtdb_species": "s__Actinotalea sp014042015", "ani": 80.181, "matched_fragments": 616, "total_fragments": 1235, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Actinotalea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.62", "min_intra_species_ani": "99.62", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_016464425.1", "gtdb_species": "s__Actinotalea solisilvae", "ani": 80.0921, "matched_fragments": 688, "total_fragments": 1235, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Actinotalea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014636275.1", "gtdb_species": "s__Actinotalea carbonis", "ani": 80.0233, "matched_fragments": 657, "total_fragments": 1235, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Actinotalea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.97", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_008364845.1", "gtdb_species": "s__Actinotalea sp008364845", "ani": 79.9781, "matched_fragments": 678, "total_fragments": 1235, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Actinotalea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009996735.1", "gtdb_species": "s__Actinotalea sp009996735", "ani": 79.933, "matched_fragments": 620, "total_fragments": 1235, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Actinotalea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000603945.1", "gtdb_species": "s__Actinotalea ferrariae", "ani": 79.6811, "matched_fragments": 527, "total_fragments": 1235, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Actinotalea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_014360395.1", "gtdb_species": "s__Actinotalea sp014360395", "ani": 79.6139, "matched_fragments": 394, "total_fragments": 1235, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Actinotalea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_006538725.1", "gtdb_species": "s__Cellulomonas gelida", "ani": 79.2551, "matched_fragments": 561, "total_fragments": 1235, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.61", "min_intra_species_ani": "99.23", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.91", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_017565425.1", "gtdb_species": "s__Actinotalea sp017565425", "ani": 79.1652, "matched_fragments": 544, "total_fragments": 1235, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Actinotalea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000312005.1", "gtdb_species": "s__Cellulomonas massiliensis", "ani": 79.037, "matched_fragments": 547, "total_fragments": 1235, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_007991755.1", "gtdb_species": "s__Cellulomonas aerilata", "ani": 78.7572, "matched_fragments": 540, "total_fragments": 1235, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001942335.1", "gtdb_species": "s__Cellulosimicrobium sp001942335", "ani": 78.5874, "matched_fragments": 537, "total_fragments": 1235, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulosimicrobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017882855.1", "gtdb_species": "s__JADGOR01 sp017882855", "ani": 78.4968, "matched_fragments": 296, "total_fragments": 1235, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__JADGOR01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016907365.1", "gtdb_species": "s__Oerskovia paurometabola", "ani": 78.3787, "matched_fragments": 511, "total_fragments": 1235, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Oerskovia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.20", "min_intra_species_ani": "99.20", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.97", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_014836755.1", "gtdb_species": "s__Oerskovia sp014836755", "ani": 78.2892, "matched_fragments": 482, "total_fragments": 1235, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Oerskovia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000971255.1", "gtdb_species": "s__Demequina rhizosphaerae", "ani": 77.8876, "matched_fragments": 372, "total_fragments": 1235, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Demequinaceae;g__Demequina", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.98", "min_intra_species_ani": "97.96", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.92", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_002090075.1", "gtdb_species": "s__Demequina sp002090075", "ani": 77.7872, "matched_fragments": 283, "total_fragments": 1235, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Demequinaceae;g__Demequina", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.699, "cell_length": -0.222, "doubling_h": null, "growth_tmp": 30.0, "optimum_tmp": null, "optimum_ph": null, "genome_size": 2155854.5, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Actinotalea", "fermentans" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }