{
    "type": "genome",
    "identifier": "GCF_007991515.1",
    "organism": "Oceanobacillus sojae",
    "title": "Oceanobacillus sojae",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "National Institute of Technology and Evaluation Biological Resource Center",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_007991515.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00170755",
        "wgs_master": "BJYM00000000.1",
        "refseq_category": "reference genome",
        "taxid": "582851",
        "species_taxid": "582851",
        "organism_name": "Oceanobacillus sojae",
        "infraspecific_name": "strain=NBRC 105379",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/07/31",
        "asm_name": "ASM799151v1",
        "asm_submitter": "National Institute of Technology and Evaluation Biological Resource Center",
        "gbrs_paired_asm": "GCA_007991515.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/991/515/GCF_007991515.1_ASM799151v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4829268",
        "genome_size_ungapped": "4829268",
        "gc_percent": "37.500000",
        "replicon_count": "0",
        "scaffold_count": "47",
        "contig_count": "47",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_007991515.1-RS_2024_08_26",
        "annotation_date": "2024-08-26",
        "total_gene_count": "4696",
        "protein_coding_gene_count": "4606",
        "non_coding_gene_count": "38",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-07-31",
    "dateModified": "2019-07-31",
    "datePublished": "2019-07-31",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Oceanobacillus sojae"
        ],
        "sample_taxid": [
            "582851"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Japan"
        ],
        "sample_host_location_id": [],
        "data_size": "1.366 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4829268",
        "Number of Sequences": "47",
        "Longest Sequences (bp)": "382233",
        "N50 (bp)": "200928",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "37.6",
        "Number of CDSs": "4692",
        "Average Protein Length": "287.8",
        "Coding Ratio (%)": "83.9",
        "Number of rRNAs": "1",
        "Number of tRNAs": "31",
        "Number of CRISPRs": "4"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Oceanobacillus sojae",
                "strain": "strain=NBRC 105379",
                "accession": "GCA_007991515.1",
                "taxid": 582851,
                "species_taxid": 582851,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1581,
                "total_fragments": 1585,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Oceanobacillus neutriphilus",
                "strain": "strain=CGMCC 1.7693",
                "accession": "GCA_014645515.1",
                "taxid": 531815,
                "species_taxid": 531815,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.63,
                "matched_fragments": 1342,
                "total_fragments": 1585,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Oceanobacillus jeddahense",
                "strain": "strain=S5",
                "accession": "GCA_000750635.1",
                "taxid": 1462527,
                "species_taxid": 1462527,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.3017,
                "matched_fragments": 1035,
                "total_fragments": 1585,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Oceanobacillus timonensis",
                "strain": "strain=Marseille-P3532",
                "accession": "GCA_900166635.1",
                "taxid": 1926285,
                "species_taxid": 1926285,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.9461,
                "matched_fragments": 839,
                "total_fragments": 1585,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Oceanobacillus kimchii",
                "strain": "strain=X50",
                "accession": "GCA_000340475.1",
                "taxid": 746691,
                "species_taxid": 746691,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.552,
                "matched_fragments": 169,
                "total_fragments": 1585,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Oceanobacillus profundus",
                "strain": "strain=DSM 18246",
                "accession": "GCA_003515705.1",
                "taxid": 372463,
                "species_taxid": 372463,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.212,
                "matched_fragments": 161,
                "total_fragments": 1585,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Oceanobacillus alkalisoli",
                "strain": "strain=APA_J-2 (6-2)",
                "accession": "GCA_021556485.1",
                "taxid": 2925113,
                "species_taxid": 2925113,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5019,
                "matched_fragments": 78,
                "total_fragments": 1585,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 4.17,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_007991515.1",
                "gtdb_species": "s__Oceanobacillus sojae",
                "ani": 100.0,
                "matched_fragments": 1581,
                "total_fragments": 1585,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Amphibacillaceae;g__Oceanobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.95",
                "min_intra_species_ani": "98.95",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCF_900162665.1",
                "gtdb_species": "s__Oceanobacillus sojae_A",
                "ani": 91.055,
                "matched_fragments": 1309,
                "total_fragments": 1585,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Amphibacillaceae;g__Oceanobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014645515.1",
                "gtdb_species": "s__Oceanobacillus neutriphilus",
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                "matched_fragments": 1344,
                "total_fragments": 1585,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Amphibacillaceae;g__Oceanobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_009389585.1",
                "gtdb_species": "s__Oceanobacillus sp009389585",
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                "matched_fragments": 1011,
                "total_fragments": 1585,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Amphibacillaceae;g__Oceanobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000750635.1",
                "gtdb_species": "s__Oceanobacillus jeddahense",
                "ani": 82.2953,
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                "total_fragments": 1585,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Amphibacillaceae;g__Oceanobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000821065.1",
                "gtdb_species": "s__Oceanobacillus oncorhynchi",
                "ani": 82.1741,
                "matched_fragments": 965,
                "total_fragments": 1585,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Amphibacillaceae;g__Oceanobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.79",
                "min_intra_species_ani": "98.49",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_018333215.1",
                "gtdb_species": "s__Oceanobacillus sp018333215",
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                "matched_fragments": 763,
                "total_fragments": 1585,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Amphibacillaceae;g__Oceanobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.211,
        "cell_length": 0.321,
        "doubling_h": null,
        "growth_tmp": 30.0,
        "optimum_tmp": 32.5,
        "optimum_ph": 8.022,
        "genome_size": 4829268.0,
        "gc_content": 37.603,
        "coding_genes": 3521.75,
        "rRNA16S_genes": 7.0,
        "tRNA_genes": 67.0,
        "gram_stain": 1.0,
        "sporulation": 1.0,
        "motility": 1.0,
        "range_salinity": 1.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Oceanobacillus",
        "sojae"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}