{ "type": "genome", "identifier": "GCF_007991695.1", "organism": "Cyclobacterium qasimii", "title": "Cyclobacterium qasimii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation Biological Resource Center", "publication": [ {} ], "properties": { "assembly_accession": "GCF_007991695.1", "bioproject": "PRJNA224116", "biosample": "SAMD00171869", "wgs_master": "BJYV00000000.1", "refseq_category": "reference genome", "taxid": "1350429", "species_taxid": "1350429", "organism_name": "Cyclobacterium qasimii", "infraspecific_name": "strain=NBRC 106168", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/07/31", "asm_name": "ASM799169v1", "asm_submitter": "National Institute of Technology and Evaluation Biological Resource Center", "gbrs_paired_asm": "GCA_007991695.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/991/695/GCF_007991695.1_ASM799169v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6230011", "genome_size_ungapped": "6230011", "gc_percent": "38.500000", "replicon_count": "0", "scaffold_count": "62", "contig_count": "62", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_007991695.1-RS_2024_09_09", "annotation_date": "2024-09-09", "total_gene_count": "4812", "protein_coding_gene_count": "4754", "non_coding_gene_count": "43", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-07-31", "dateModified": "2019-07-31", "datePublished": "2019-07-31", "_annotation": { "sample_count": 1, "sample_organism": [ "Cyclobacterium qasimii" ], "sample_taxid": [ "1350429" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Norway:Svalbard, Kongsfjord" ], "sample_host_location_id": [], "data_size": "1.763 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6230011", "Number of Sequences": "62", "Longest Sequences (bp)": "1031242", "N50 (bp)": "322482", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "38.6", "Number of CDSs": "4749", "Average Protein Length": "372.9", "Coding Ratio (%)": "85.3", "Number of rRNAs": "1", "Number of tRNAs": "36", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Cyclobacterium qasimii", "strain": "strain=NBRC 106168", "accession": "GCA_007991695.1", "taxid": 1350429, "species_taxid": 1350429, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2043, "total_fragments": 2043, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Cyclobacterium qasimii", "strain": "strain=M12-11B", "accession": "GCA_000427295.1", "taxid": 1350429, "species_taxid": 1350429, "relation_to_type": "type", "validated": true, "ani": 99.9551, "matched_fragments": 1990, "total_fragments": 2043, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Cyclobacterium amurskyense", "strain": "strain=KCTC 12363", "accession": "GCA_001050135.1", "taxid": 320787, "species_taxid": 320787, "relation_to_type": "type", "validated": true, "ani": 83.0037, "matched_fragments": 1462, "total_fragments": 2043, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cyclobacterium marinum", "strain": "strain=DSM 745", "accession": "GCA_000222485.1", "taxid": 104, "species_taxid": 104, "relation_to_type": "type", "validated": 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"total_fragments": 2043, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Litoribacter populi", "strain": "strain=XAAS-A1", "accession": "GCA_007483685.1", "taxid": 2598460, "species_taxid": 2598460, "relation_to_type": "type", "validated": true, "ani": 76.169, "matched_fragments": 71, "total_fragments": 2043, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algoriphagus aquimaris", "strain": "strain=F21", "accession": "GCA_004358035.1", "taxid": 2547398, "species_taxid": 2547398, "relation_to_type": "type", "validated": true, "ani": 75.441, "matched_fragments": 53, "total_fragments": 2043, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000427295.1", "gtdb_species": "s__Cyclobacterium qasimii", "ani": 99.9551, "matched_fragments": 1990, "total_fragments": 2043, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Cyclobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.96", "min_intra_species_ani": "99.96", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_001050135.1", "gtdb_species": "s__Cyclobacterium amurskyense", "ani": 82.999, "matched_fragments": 1464, "total_fragments": 2043, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Cyclobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000222485.1", "gtdb_species": "s__Cyclobacterium marinum", "ani": 80.0692, "matched_fragments": 1046, "total_fragments": 2043, "gtdb_taxonomy": 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