{ "type": "genome", "identifier": "GCF_007992015.1", "organism": "Levilactobacillus namurensis", "title": "Levilactobacillus namurensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation Biological Resource Center", "publication": [ {} ], "properties": { "assembly_accession": "GCF_007992015.1", "bioproject": "PRJNA224116", "biosample": "SAMD00172647", "wgs_master": "BJZL00000000.1", "refseq_category": "reference genome", "taxid": "380393", "species_taxid": "380393", "organism_name": "Levilactobacillus namurensis", "infraspecific_name": "strain=NBRC 107158", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/07/31", "asm_name": "ASM799201v1", "asm_submitter": "National Institute of Technology and Evaluation Biological Resource Center", "gbrs_paired_asm": "GCA_007992015.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/992/015/GCF_007992015.1_ASM799201v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2455734", "genome_size_ungapped": "2455734", "gc_percent": "52.000000", "replicon_count": "0", "scaffold_count": "109", "contig_count": "109", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_007992015.1-RS_2024_08_26", "annotation_date": "2024-08-26", "total_gene_count": "2277", "protein_coding_gene_count": "2206", "non_coding_gene_count": "50", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-07-31", "dateModified": "2019-07-31", "datePublished": "2019-07-31", "_annotation": { "sample_count": 1, "sample_organism": [ "Levilactobacillus namurensis" ], "sample_taxid": [ "380393" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Belgium:Namur" ], "sample_host_location_id": [], "data_size": "0.706 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2455734", "Number of Sequences": "109", "Longest Sequences (bp)": "171687", "N50 (bp)": "38941", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "52.0", "Number of CDSs": "2255", "Average Protein Length": "305.8", "Coding Ratio (%)": "84.2", "Number of rRNAs": "3", "Number of tRNAs": "44", "Number of CRISPRs": "5" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Levilactobacillus namurensis", "strain": "strain=DSM 19117", "accession": "GCA_001434785.1", "taxid": 380393, "species_taxid": 380393, 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"below_threshold" }, { "organism_name": "Secundilactobacillus oryzae", "strain": "strain=JCM 18671", "accession": "GCA_001311525.1", "taxid": 1202668, "species_taxid": 1202668, "relation_to_type": "type", "validated": true, "ani": 78.2258, "matched_fragments": 56, "total_fragments": 764, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001434785.1", "gtdb_species": "s__Levilactobacillus namurensis", "ani": 99.9961, "matched_fragments": 762, "total_fragments": 764, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Levilactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.48", "min_intra_species_ani": "95.39", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.87", "num_clustered_genomes": 6, "status": "conclusive" }, { "accession": "GCF_001435095.1", "gtdb_species": 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