{ "type": "genome", "identifier": "GCF_007992115.1", "organism": "Aeromicrobium flavum", "title": "Aeromicrobium flavum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation Biological Resource Center", "publication": [ {} ], "properties": { "assembly_accession": "GCF_007992115.1", "bioproject": "PRJNA224116", "biosample": "SAMD00172652", "wgs_master": "BJZQ00000000.1", "refseq_category": "reference genome", "taxid": "416568", "species_taxid": "416568", "organism_name": "Aeromicrobium flavum", "infraspecific_name": "strain=NBRC 107625", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/07/31", "asm_name": "ASM799211v1", "asm_submitter": "National Institute of Technology and Evaluation Biological Resource Center", "gbrs_paired_asm": "GCA_007992115.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/992/115/GCF_007992115.1_ASM799211v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3090412", "genome_size_ungapped": "3090412", "gc_percent": "71.000000", "replicon_count": "0", "scaffold_count": "31", "contig_count": "31", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_007992115.1-RS_2024_08_26", "annotation_date": "2024-08-26", "total_gene_count": "3074", "protein_coding_gene_count": "3010", "non_coding_gene_count": "51", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-07-31", "dateModified": "2019-07-31", "datePublished": "2019-07-31", "_annotation": { "sample_count": 1, "sample_organism": [ "Aeromicrobium flavum" ], "sample_taxid": [ "416568" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Wuhan University campus" ], "sample_host_location_id": [], "data_size": "0.824 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3090412", "Number of Sequences": "31", "Longest Sequences (bp)": "593887", "N50 (bp)": "183631", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "70.8", "Number of CDSs": "3021", "Average Protein Length": "318.8", "Coding Ratio (%)": "93.5", "Number of rRNAs": "3", "Number of tRNAs": "47", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Aeromicrobium phoceense", "strain": "strain=Marseille-Q0843", "accession": "GCA_013868155.1", "taxid": 2754045, "species_taxid": 2754045, "relation_to_type": "type", "validated": true, "ani": 86.9386, "matched_fragments": 794, "total_fragments": 1016, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aeromicrobium tamlense", "strain": "strain=DSM 19087", "accession": "GCA_013408555.1", "taxid": 375541, "species_taxid": 375541, "relation_to_type": "type", "validated": true, "ani": 86.8975, "matched_fragments": 776, "total_fragments": 1016, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aeromicrobium choanae", "strain": "strain=9H-4", "accession": "GCA_900167475.1", "taxid": 1736691, "species_taxid": 1736691, "relation_to_type": "type", "validated": true, "ani": 86.8259, "matched_fragments": 780, "total_fragments": 1016, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aeromicrobium tamlense", "strain": "strain=SSW1-57", "accession": "GCA_014672995.1", "taxid": 375541, "species_taxid": 375541, "relation_to_type": "type", "validated": true, "ani": 86.7962, "matched_fragments": 790, "total_fragments": 1016, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aeromicrobium massiliense", "strain": "strain=JC14", "accession": "GCA_000312105.1", "taxid": 1464554, "species_taxid": 1464554, "relation_to_type": "type", "validated": true, "ani": 81.0304, "matched_fragments": 534, "total_fragments": 1016, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aeromicrobium terrae", "strain": "strain=CC-CFT486", "accession": "GCA_008039565.1", "taxid": 2498846, "species_taxid": 2498846, "relation_to_type": "type", "validated": true, "ani": 80.9014, "matched_fragments": 468, "total_fragments": 1016, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aeromicrobium erythreum", "strain": "strain=AR18", "accession": "GCA_001509405.1", "taxid": 2041, "species_taxid": 2041, "relation_to_type": "type", "validated": true, "ani": 80.7726, "matched_fragments": 534, "total_fragments": 1016, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aeromicrobium stalagmiti", "strain": "strain=YC3-14", "accession": "GCA_013283745.1", "taxid": 2738988, "species_taxid": 2738988, "relation_to_type": "type", "validated": true, "ani": 80.6085, "matched_fragments": 541, "total_fragments": 1016, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aeromicrobium phragmitis", "strain": "strain=9W16Y-2", "accession": "GCA_003674095.1", "taxid": 2478914, "species_taxid": 2478914, "relation_to_type": "type", "validated": true, "ani": 80.0564, "matched_fragments": 466, "total_fragments": 1016, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aeromicrobium piscarium", "strain": "strain=Co35", "accession": "GCA_007421815.1", "taxid": 2590901, "species_taxid": 2590901, "relation_to_type": "type", "validated": true, "ani": 79.6402, "matched_fragments": 464, "total_fragments": 1016, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides furvisabuli", "strain": "strain=JCM 13813", "accession": "GCA_021083185.1", "taxid": 375542, "species_taxid": 375542, "relation_to_type": "type", "validated": true, "ani": 78.5727, "matched_fragments": 382, "total_fragments": 1016, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides dongkuii", "strain": "strain=S-713", "accession": "GCA_014127485.1", "taxid": 2760089, "species_taxid": 2760089, "relation_to_type": "type", "validated": true, "ani": 78.4009, "matched_fragments": 429, "total_fragments": 1016, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides panacis", "strain": "strain=G188", "accession": "GCA_019039255.1", "taxid": 2849501, "species_taxid": 2849501, "relation_to_type": "type", "validated": true, "ani": 78.2703, "matched_fragments": 408, "total_fragments": 1016, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides baculatus", "strain": "strain=G10", "accession": "GCA_016735675.1", "taxid": 2801337, "species_taxid": 2801337, "relation_to_type": "type", "validated": true, "ani": 78.2554, "matched_fragments": 391, "total_fragments": 1016, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides donggukensis", "strain": "strain=MJB4", "accession": "GCA_014842875.1", "taxid": 2774019, "species_taxid": 2774019, "relation_to_type": "type", "validated": true, "ani": 78.2431, "matched_fragments": 343, "total_fragments": 1016, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_007992115.1", "gtdb_species": "s__Aeromicrobium flavum", "ani": 100.0, "matched_fragments": 1013, "total_fragments": 1016, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Aeromicrobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_014334735.1", "gtdb_species": "s__Aeromicrobium sp014334735", "ani": 87.0264, "matched_fragments": 791, "total_fragments": 1016, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Aeromicrobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.41", "min_intra_species_ani": "98.82", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.93", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_013868155.1", "gtdb_species": "s__Aeromicrobium phoceense", "ani": 86.9386, "matched_fragments": 794, "total_fragments": 1016, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Aeromicrobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.64", "min_intra_species_ani": "97.64", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_013408555.1", "gtdb_species": "s__Aeromicrobium tamlense", "ani": 86.8975, "matched_fragments": 776, "total_fragments": 1016, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Aeromicrobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900167475.1", "gtdb_species": "s__Aeromicrobium choanae", "ani": 86.8605, "matched_fragments": 777, "total_fragments": 1016, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Aeromicrobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.699, "cell_length": -0.523, "doubling_h": null, "growth_tmp": 27.0, "optimum_tmp": 30.0, "optimum_ph": 7.0, "genome_size": 3090412.0, "gc_content": 70.785, "coding_genes": 3236.0, "rRNA16S_genes": 2.0, "tRNA_genes": 47.0, "gram_stain": 1.0, "sporulation": 1.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 1.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Aeromicrobium", "flavum" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }