{ "tc_result": [ { "organism_name": "Methylobacterium haplocladii", "strain": "strain=NBRC 107714", "accession": "GCA_007992175.1", "taxid": 1176176, "species_taxid": 1176176, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1490, "total_fragments": 1494, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Methylobacterium haplocladii", "strain": "strain=DSM 24195", "accession": "GCA_022179265.1", "taxid": 1176176, "species_taxid": 1176176, "relation_to_type": "type", "validated": true, "ani": 99.9704, "matched_fragments": 1419, "total_fragments": 1494, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Methylobacterium brachythecii", "strain": "strain=DSM 24105", "accession": "GCA_014196345.1", "taxid": 1176177, "species_taxid": 1176177, "relation_to_type": "type", "validated": true, "ani": 84.4901, "matched_fragments": 1063, "total_fragments": 1494, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium gnaphalii", "strain": "strain=DSM 24027", "accession": "GCA_022179205.1", "taxid": 1010610, "species_taxid": 1010610, "relation_to_type": "type", "validated": true, "ani": 83.9406, "matched_fragments": 930, "total_fragments": 1494, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium gnaphalii", "strain": "strain=NBRC 107716", "accession": "GCA_007992215.1", "taxid": 1010610, "species_taxid": 1010610, "relation_to_type": "type", "validated": true, "ani": 83.751, "matched_fragments": 987, "total_fragments": 1494, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylorubrum podarium", "strain": "strain=DSM 15083", "accession": "GCA_022179745.1", "taxid": 200476, "species_taxid": 200476, "relation_to_type": "type", "validated": true, "ani": 82.2492, "matched_fragments": 752, "total_fragments": 1494, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylorubrum extorquens", "strain": "strain=TK 0001", "accession": "GCA_900234795.1", "taxid": 408, "species_taxid": 408, "relation_to_type": "type", "validated": true, "ani": 82.1633, "matched_fragments": 906, "total_fragments": 1494, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylorubrum aminovorans", "strain": "strain=NBRC 15686", "accession": "GCA_022179725.1", "taxid": 269069, "species_taxid": 269069, "relation_to_type": "type", "validated": true, "ani": 81.8807, "matched_fragments": 910, "total_fragments": 1494, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium cerastii", "strain": "strain=DSM 23679", "accession": "GCA_022179125.1", "taxid": 932741, "species_taxid": 932741, "relation_to_type": "type", "validated": true, "ani": 81.8065, "matched_fragments": 882, "total_fragments": 1494, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium iners", "strain": "strain=DSM 19015", "accession": "GCA_022179305.1", "taxid": 418707, "species_taxid": 418707, "relation_to_type": "type", "validated": true, "ani": 81.273, "matched_fragments": 777, "total_fragments": 1494, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium phyllosphaerae", "strain": "strain=CBMB27", "accession": "GCA_001936175.1", "taxid": 418223, "species_taxid": 418223, "relation_to_type": "suspected-type", "validated": true, "ani": 80.4741, "matched_fragments": 800, "total_fragments": 1494, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium phyllosphaerae", "strain": "strain=CBMB27", "accession": "GCA_900113465.1", "taxid": 418223, "species_taxid": 418223, "relation_to_type": "suspected-type", "validated": true, "ani": 80.4622, "matched_fragments": 788, "total_fragments": 1494, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_007992175.1", "gtdb_species": "s__Methylobacterium haplocladii", "ani": 100.0, "matched_fragments": 1490, "total_fragments": 1494, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Methylobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_008040035.1", "gtdb_species": "s__Methylobacterium sp008040035", "ani": 88.8415, "matched_fragments": 1130, "total_fragments": 1494, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Methylobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014196345.1", "gtdb_species": "s__Methylobacterium brachythecii", "ani": 84.5051, "matched_fragments": 1060, "total_fragments": 1494, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Methylobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_007992215.1", "gtdb_species": "s__Methylobacterium gnaphalii", "ani": 83.7471, "matched_fragments": 988, "total_fragments": 1494, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Methylobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900234795.1", "gtdb_species": "s__Methylobacterium extorquens", "ani": 82.1551, "matched_fragments": 907, "total_fragments": 1494, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Methylobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.03", "min_intra_species_ani": "96.19", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.73", "num_clustered_genomes": 17, "status": "-" }, { "accession": "GCF_008039875.1", "gtdb_species": "s__Methylobacterium sp008039875", "ani": 82.0396, "matched_fragments": 860, "total_fragments": 1494, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Methylobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.26", "min_intra_species_ani": "97.89", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.87", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_003111705.1", "gtdb_species": "s__Methylobacterium sp003111705", "ani": 81.8303, "matched_fragments": 907, "total_fragments": 1494, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Methylobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.28", "min_intra_species_ani": "97.28", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.88", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_008040045.1", "gtdb_species": "s__Methylobacterium sp008040045", "ani": 81.7863, "matched_fragments": 871, "total_fragments": 1494, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Methylobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.25", "min_intra_species_ani": "98.17", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.85", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_005502455.1", "gtdb_species": "s__Methylobacterium sp005502455", "ani": 81.4157, "matched_fragments": 823, "total_fragments": 1494, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Methylobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001422885.1", "gtdb_species": "s__Methylobacterium sp001422885", "ani": 81.4017, "matched_fragments": 825, "total_fragments": 1494, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Methylobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001423265.1", "gtdb_species": "s__Methylobacterium sp001423265", "ani": 81.1861, "matched_fragments": 789, "total_fragments": 1494, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Methylobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.78", "min_intra_species_ani": "98.73", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.94", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_014138435.1", "gtdb_species": "s__Methylobacterium fujisawaense", "ani": 80.5711, "matched_fragments": 784, "total_fragments": 1494, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Methylobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.82", "min_intra_species_ani": "98.73", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.90", "num_clustered_genomes": 12, "status": "-" } ] }