{ "type": "genome", "identifier": "GCF_007992195.1", "organism": "Methylobacterium oxalidis", "title": "Methylobacterium oxalidis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation Biological Resource Center", "publication": [ {} ], "properties": { "assembly_accession": "GCF_007992195.1", "bioproject": "PRJNA224116", "biosample": "SAMD00172657", "wgs_master": "BJZU00000000.1", "refseq_category": "reference genome", "taxid": "944322", "species_taxid": "944322", "organism_name": "Methylobacterium oxalidis", "infraspecific_name": "strain=NBRC 107715", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/07/31", "asm_name": "ASM799219v1", "asm_submitter": "National Institute of Technology and Evaluation Biological Resource Center", "gbrs_paired_asm": "GCA_007992195.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/992/195/GCF_007992195.1_ASM799219v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6288989", "genome_size_ungapped": "6288989", "gc_percent": "70.000000", "replicon_count": "0", "scaffold_count": "343", "contig_count": "343", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_007992195.1-RS_2024_09_09", "annotation_date": "2024-09-09", "total_gene_count": "6272", "protein_coding_gene_count": "6073", "non_coding_gene_count": "53", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-07-31", "dateModified": "2019-07-31", "datePublished": "2019-07-31", "_annotation": { "sample_count": 1, "sample_organism": [ "Methylobacterium oxalidis" ], "sample_taxid": [ "944322" ], "sample_host_organism": [ "Oxalis corniculata" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Japan:Okayama, Kurashiki" ], "sample_host_location_id": [], "data_size": "1.711 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6288989", "Number of Sequences": "343", "Longest Sequences (bp)": "225325", "N50 (bp)": "50037", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "70.0", "Number of CDSs": "6193", "Average Protein Length": "277.6", "Coding Ratio (%)": "82.0", "Number of rRNAs": "3", "Number of tRNAs": "56", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Methylobacterium oxalidis", "strain": "strain=NBRC 107715", "accession": "GCA_007992195.1", "taxid": 944322, 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1934, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Afifella aestuarii", "strain": "strain=JA968", "accession": "GCA_004023665.1", "taxid": 1909496, "species_taxid": 1909496, "relation_to_type": "type", "validated": true, "ani": 76.1333, "matched_fragments": 173, "total_fragments": 1934, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinopolyspora mortivallis", "strain": "strain=HS-1", "accession": "GCA_000384035.1", "taxid": 33906, "species_taxid": 33906, "relation_to_type": "type", "validated": true, "ani": 74.9883, "matched_fragments": 78, "total_fragments": 1934, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharomonospora viridis", "strain": "strain=DSM 43017", "accession": "GCA_000023865.1", "taxid": 1852, "species_taxid": 1852, "relation_to_type": "type", "validated": true, "ani": 74.8305, "matched_fragments": 82, "total_fragments": 1934, "ani_threshold": 95, "status": "below_threshold" } ], 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"min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_902141845.1", "gtdb_species": "s__Methylobacterium symbioticum", "ani": 83.1452, "matched_fragments": 1012, "total_fragments": 1934, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Methylobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_008040045.1", "gtdb_species": "s__Methylobacterium sp008040045", "ani": 82.8788, "matched_fragments": 971, "total_fragments": 1934, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Methylobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.25", "min_intra_species_ani": "98.17", "mean_intra_species_af": "0.85", 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