{ "type": "genome", "identifier": "GCF_007992295.1", "organism": "Pediococcus argentinicus", "title": "Pediococcus argentinicus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation Biological Resource Center", "publication": [ {} ], "properties": { "assembly_accession": "GCF_007992295.1", "bioproject": "PRJNA224116", "biosample": "SAMD00172663", "wgs_master": "BJZZ00000000.1", "refseq_category": "na", "taxid": "480391", "species_taxid": "480391", "organism_name": "Pediococcus argentinicus", "infraspecific_name": "strain=NBRC 107827", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/07/31", "asm_name": "ASM799229v1", "asm_submitter": "National Institute of Technology and Evaluation Biological Resource Center", "gbrs_paired_asm": "GCA_007992295.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/992/295/GCF_007992295.1_ASM799229v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "1789305", "genome_size_ungapped": "1789305", "gc_percent": "36.500000", "replicon_count": "0", "scaffold_count": "97", "contig_count": "97", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_007992295.1-RS_2024_08_26", "annotation_date": "2024-08-26", "total_gene_count": "1876", "protein_coding_gene_count": "1805", "non_coding_gene_count": "48", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-07-31", "dateModified": "2019-07-31", "datePublished": "2019-07-31", "_annotation": { "sample_count": 1, "sample_organism": [ "Pediococcus argentinicus" ], "sample_taxid": [ "480391" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Argentina" ], "sample_host_location_id": [], "data_size": "0.509 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "1789305", "Number of Sequences": "97", "Longest Sequences (bp)": "133257", "N50 (bp)": "42089", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "36.7", "Number of CDSs": "1796", "Average Protein Length": "291.1", "Coding Ratio (%)": "87.6", "Number of rRNAs": "2", "Number of tRNAs": "42", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pediococcus argentinicus", "strain": "strain=CCUG 54535", "accession": "GCA_012396535.1", "taxid": 480391, "species_taxid": 480391, 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79.6737, "matched_fragments": 67, "total_fragments": 548, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pediococcus acidilactici", "strain": "strain=CCUG 32235", "accession": "GCA_012396515.1", "taxid": 1254, "species_taxid": 1254, "relation_to_type": "neotype", "validated": true, "ani": 79.6733, "matched_fragments": 68, "total_fragments": 548, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pediococcus pentosaceus", "strain": "strain=FDAARGOS_1009", "accession": "GCA_016127775.1", "taxid": 1255, "species_taxid": 1255, "relation_to_type": "type", "validated": true, "ani": 79.2798, "matched_fragments": 131, "total_fragments": 548, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pediococcus claussenii", "strain": "strain=ATCC BAA-344", "accession": "GCA_000237995.2", "taxid": 187452, "species_taxid": 187452, "relation_to_type": "type", "validated": true, "ani": 79.2153, "matched_fragments": 125, "total_fragments": 548, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pediococcus pentosaceus", "strain": "strain=ATCC 33316", "accession": "GCA_004354495.1", "taxid": 1255, "species_taxid": 1255, "relation_to_type": "type", "validated": true, "ani": 79.1251, "matched_fragments": 131, "total_fragments": 548, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pediococcus pentosaceus", "strain": "strain=DSM 20336", "accession": "GCA_001437285.1", "taxid": 1255, "species_taxid": 1255, "relation_to_type": "type", "validated": true, "ani": 78.9858, "matched_fragments": 125, "total_fragments": 548, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pediococcus claussenii", "strain": "strain=DSM 14800", "accession": "GCA_001436905.1", "taxid": 187452, "species_taxid": 187452, "relation_to_type": "type", "validated": true, "ani": 78.69, "matched_fragments": 117, "total_fragments": 548, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pediococcus ethanolidurans", "strain": "strain=DSM 22301", "accession": "GCA_001437405.1", "taxid": 319653, "species_taxid": 319653, "relation_to_type": "type", "validated": true, "ani": 78.1653, "matched_fragments": 98, "total_fragments": 548, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pediococcus cellicola", "strain": "strain=DSM 17757", "accession": "GCA_001438655.1", "taxid": 319652, "species_taxid": 319652, "relation_to_type": "type", "validated": true, "ani": 78.0701, "matched_fragments": 86, "total_fragments": 548, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pediococcus ethanolidurans", "strain": "strain=CGMCC 1.3889", "accession": "GCA_900111205.1", "taxid": 319653, "species_taxid": 319653, "relation_to_type": "type", "validated": true, "ani": 78.0229, "matched_fragments": 98, "total_fragments": 548, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, 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parvulus", "ani": 78.9344, "matched_fragments": 74, "total_fragments": 548, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Pediococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.29", "min_intra_species_ani": "98.77", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.88", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_002982135.1", "gtdb_species": "s__Pediococcus inopinatus", "ani": 78.691, "matched_fragments": 88, "total_fragments": 548, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Pediococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.47", "min_intra_species_ani": "98.95", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.92", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_001437075.1", "gtdb_species": "s__Pediococcus stilesii", "ani": 78.5932, "matched_fragments": 104, 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"spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Pediococcus", "argentinicus" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }