{ "type": "genome", "identifier": "GCF_007992435.1", "organism": "Brevifollis gellanilyticus", "title": "Brevifollis gellanilyticus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation Biological Resource Center", "publication": [ {} ], "properties": { "assembly_accession": "GCF_007992435.1", "bioproject": "PRJNA224116", "biosample": "SAMD00172670", "wgs_master": "BKAG00000000.1", "refseq_category": "reference genome", "taxid": "748831", "species_taxid": "748831", "organism_name": "Brevifollis gellanilyticus", "infraspecific_name": "strain=NBRC 108608", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/07/31", "asm_name": "ASM799243v1", "asm_submitter": "National Institute of Technology and Evaluation Biological Resource Center", "gbrs_paired_asm": "GCA_007992435.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/992/435/GCF_007992435.1_ASM799243v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7648353", "genome_size_ungapped": "7648353", "gc_percent": "60.000000", "replicon_count": "0", "scaffold_count": "137", "contig_count": "137", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_007992435.1-RS_2024_05_06", "annotation_date": "2024-05-06", "total_gene_count": "5791", "protein_coding_gene_count": "5712", "non_coding_gene_count": "64", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-07-31", "dateModified": "2019-07-31", "datePublished": "2019-07-31", "_annotation": { "sample_count": 1, "sample_organism": [ "Brevifollis gellanilyticus" ], "sample_taxid": [ "748831" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Japan:Tokyo, Bunkyo-ku" ], "sample_host_location_id": [], "data_size": "2.152 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7648353", "Number of Sequences": "137", "Longest Sequences (bp)": "400962", "N50 (bp)": "133027", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "59.9", "Number of CDSs": "5783", "Average Protein Length": "393.1", "Coding Ratio (%)": "89.2", "Number of rRNAs": "3", "Number of tRNAs": "59", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Brevifollis gellanilyticus", "strain": "strain=NBRC 108608", "accession": "GCA_007992435.1", "taxid": 748831, "species_taxid": 748831, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2478, "total_fragments": 2486, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Prosthecobacter vanneervenii", "strain": "strain=DSM 12252", "accession": "GCA_014203095.1", "taxid": 48466, "species_taxid": 48466, "relation_to_type": "type", "validated": true, "ani": 77.9319, "matched_fragments": 589, "total_fragments": 2486, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prosthecobacter debontii", "strain": "strain=ATCC 700200", "accession": "GCA_900167535.1", "taxid": 48467, "species_taxid": 48467, "relation_to_type": "type", "validated": true, "ani": 77.6491, "matched_fragments": 441, "total_fragments": 2486, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prosthecobacter dejongeii", "strain": "strain=DSM 12251", "accession": "GCA_014203045.1", "taxid": 48465, "species_taxid": 48465, "relation_to_type": "type", "validated": true, "ani": 77.4385, "matched_fragments": 455, "total_fragments": 2486, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prosthecobacter fusiformis", "strain": "strain=ATCC 25309", "accession": "GCA_004364345.1", "taxid": 48464, "species_taxid": 48464, "relation_to_type": "type", "validated": true, "ani": 77.3568, "matched_fragments": 457, "total_fragments": 2486, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseimicrobium gellanilyticum", "strain": "strain=DSM 25532", "accession": "GCA_003315205.1", "taxid": 748857, "species_taxid": 748857, "relation_to_type": "type", "validated": true, "ani": 76.8085, "matched_fragments": 312, "total_fragments": 2486, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Verrucomicrobium spinosum", "strain": "strain=JCM 18804", "accession": "GCA_001313125.1", "taxid": 2736, "species_taxid": 2736, "relation_to_type": "type", "validated": true, "ani": 76.6372, "matched_fragments": 266, "total_fragments": 2486, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Verrucomicrobium spinosum", "strain": "strain=DSM 4136", "accession": "GCA_000172155.1", "taxid": 2736, "species_taxid": 2736, "relation_to_type": "type", "validated": true, "ani": 76.59, "matched_fragments": 278, "total_fragments": 2486, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteolibacter yonseiensis", "strain": "strain=JCM 18052", "accession": "GCA_016595465.1", "taxid": 1144680, "species_taxid": 1144680, "relation_to_type": "type", "validated": true, "ani": 76.1864, "matched_fragments": 95, "total_fragments": 2486, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteolibacter luteus", "strain": "strain=G-1-1-1", "accession": "GCA_012913485.1", "taxid": 2728835, "species_taxid": 2728835, "relation_to_type": "type", "validated": true, "ani": 76.0114, "matched_fragments": 121, "total_fragments": 2486, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Haloferula rosea", "strain": "strain=KCTC 22201", "accession": "GCA_016595525.1", "taxid": 490093, "species_taxid": 490093, "relation_to_type": "type", "validated": true, "ani": 75.9695, "matched_fragments": 65, "total_fragments": 2486, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_007992435.1", "gtdb_species": "s__Prosthecobacter gellanilyticus", "ani": 100.0, "matched_fragments": 2478, "total_fragments": 2486, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Verrucomicrobiales;f__Verrucomicrobiaceae;g__Prosthecobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_019186985.1", "gtdb_species": "s__Prosthecobacter sp019186985", "ani": 78.9654, "matched_fragments": 837, "total_fragments": 2486, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Verrucomicrobiales;f__Verrucomicrobiaceae;g__Prosthecobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002336895.1", "gtdb_species": "s__Prosthecobacter sp002336895", "ani": 78.0557, "matched_fragments": 627, "total_fragments": 2486, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Verrucomicrobiales;f__Verrucomicrobiaceae;g__Prosthecobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016795465.1", "gtdb_species": "s__Prosthecobacter sp016795465", "ani": 78.0343, "matched_fragments": 641, "total_fragments": 2486, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Verrucomicrobiales;f__Verrucomicrobiaceae;g__Prosthecobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_014879935.1", "gtdb_species": "s__Prosthecobacter sp014879935", "ani": 77.9829, "matched_fragments": 623, "total_fragments": 2486, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Verrucomicrobiales;f__Verrucomicrobiaceae;g__Prosthecobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014203095.1", "gtdb_species": "s__Prosthecobacter vanneervenii", "ani": 77.9599, "matched_fragments": 582, "total_fragments": 2486, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Verrucomicrobiales;f__Verrucomicrobiaceae;g__Prosthecobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017301975.1", "gtdb_species": "s__Prosthecobacter sp017301975", "ani": 77.894, "matched_fragments": 597, "total_fragments": 2486, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Verrucomicrobiales;f__Verrucomicrobiaceae;g__Prosthecobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903848465.1", "gtdb_species": "s__Prosthecobacter sp903848465", "ani": 77.8478, "matched_fragments": 507, "total_fragments": 2486, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Verrucomicrobiales;f__Verrucomicrobiaceae;g__Prosthecobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.97", "min_intra_species_ani": "99.92", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.96", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCA_015075365.1", "gtdb_species": "s__Prosthecobacter sp015075365", "ani": 77.7981, "matched_fragments": 680, "total_fragments": 2486, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Verrucomicrobiales;f__Verrucomicrobiaceae;g__Prosthecobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002343505.1", "gtdb_species": "s__Prosthecobacter sp002343505", "ani": 77.7885, "matched_fragments": 573, "total_fragments": 2486, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Verrucomicrobiales;f__Verrucomicrobiaceae;g__Prosthecobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.23", "min_intra_species_ani": "97.36", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.88", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_002482965.1", "gtdb_species": "s__Prosthecobacter sp002482965", "ani": 77.7781, "matched_fragments": 575, "total_fragments": 2486, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Verrucomicrobiales;f__Verrucomicrobiaceae;g__Prosthecobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903960845.1", "gtdb_species": "s__Prosthecobacter sp903960845", "ani": 77.7402, "matched_fragments": 519, "total_fragments": 2486, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Verrucomicrobiales;f__Verrucomicrobiaceae;g__Prosthecobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.18", "min_intra_species_ani": "98.90", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.82", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_900167535.1", "gtdb_species": "s__Prosthecobacter debontii", "ani": 77.6505, "matched_fragments": 440, "total_fragments": 2486, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Verrucomicrobiales;f__Verrucomicrobiaceae;g__Prosthecobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002279765.1", "gtdb_species": "s__Prosthecobacter sp002279765", "ani": 77.5984, "matched_fragments": 525, "total_fragments": 2486, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Verrucomicrobiales;f__Verrucomicrobiaceae;g__Prosthecobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014203045.1", "gtdb_species": "s__Prosthecobacter dejongeii", "ani": 77.4539, "matched_fragments": 454, "total_fragments": 2486, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Verrucomicrobiales;f__Verrucomicrobiaceae;g__Prosthecobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004364345.1", "gtdb_species": "s__Prosthecobacter fusiformis", "ani": 77.3509, "matched_fragments": 458, "total_fragments": 2486, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Verrucomicrobiales;f__Verrucomicrobiaceae;g__Prosthecobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003453085.1", "gtdb_species": "s__Prosthecobacter sp003453085", "ani": 77.3223, "matched_fragments": 320, "total_fragments": 2486, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Verrucomicrobiales;f__Verrucomicrobiaceae;g__Prosthecobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903854655.1", "gtdb_species": "s__CAINXC01 sp903854655", "ani": 76.4497, "matched_fragments": 305, "total_fragments": 2486, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Verrucomicrobiales;f__Verrucomicrobiaceae;g__CAINXC01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.046, "cell_length": 0.439, "doubling_h": null, "growth_tmp": 30.0, "optimum_tmp": 28.0, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": 0.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 1.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Brevifollis", "gellanilyticus" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }