{ "type": "genome", "identifier": "GCF_007993065.1", "organism": "Paracoccus aurantiacus", "title": "Paracoccus aurantiacus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Xiamen University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_007993065.1", "bioproject": "PRJNA224116", "biosample": "SAMN12390459", "wgs_master": "VOPL00000000.1", "refseq_category": "reference genome", "taxid": "2599412", "species_taxid": "2599412", "organism_name": "Paracoccus aurantiacus", "infraspecific_name": "strain=TK008", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/08/12", "asm_name": "ASM799306v1", "asm_submitter": "Xiamen University", "gbrs_paired_asm": "GCA_007993065.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/993/065/GCF_007993065.1_ASM799306v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3788400", "genome_size_ungapped": "3788400", "gc_percent": "62.500000", "replicon_count": "0", "scaffold_count": "42", "contig_count": "42", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_007993065.1-RS_2024_05_04", "annotation_date": "2024-05-04", "total_gene_count": "3789", "protein_coding_gene_count": "3692", "non_coding_gene_count": "54", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-08-12", "dateModified": "2019-08-12", "datePublished": "2019-08-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Paracoccus aurantiacus" ], "sample_taxid": [ "2599412" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Taiwan" ], "sample_host_location_id": [], "data_size": "1.050 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3788400", "Number of Sequences": "42", "Longest Sequences (bp)": "1134541", "N50 (bp)": "435274", "Gap Ratio (%)": "0.000079", "GCcontent (%)": "62.5", "Number of CDSs": "3720", "Average Protein Length": "310.0", "Coding Ratio (%)": "91.3", "Number of rRNAs": "3", "Number of tRNAs": "48", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Paracoccus aurantiacus", "strain": "strain=TK008", "accession": "GCA_007993065.1", "taxid": 2599412, "species_taxid": 2599412, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1245, "total_fragments": 1246, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Paracoccus xiamenensis", "strain": "strain=12-3", "accession": "GCA_011308835.1", "taxid": 2714901, "species_taxid": 2714901, "relation_to_type": "type", "validated": true, "ani": 82.548, "matched_fragments": 756, "total_fragments": 1246, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus isoporae", "strain": "strain=DSM 22220", "accession": "GCA_900101865.1", "taxid": 591205, "species_taxid": 591205, "relation_to_type": "type", "validated": true, "ani": 81.3543, "matched_fragments": 643, "total_fragments": 1246, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus jeotgali", "strain": "strain=CBA4604", "accession": "GCA_002865605.1", "taxid": 2065379, "species_taxid": 2065379, "relation_to_type": "type", "validated": true, "ani": 81.2269, "matched_fragments": 602, "total_fragments": 1246, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus lutimaris", "strain": "strain=CECT 8525", "accession": "GCA_003337565.1", "taxid": 1490030, "species_taxid": 1490030, "relation_to_type": "type", "validated": true, "ani": 79.8252, "matched_fragments": 478, "total_fragments": 1246, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus siganidrum", "strain": "strain=M26", "accession": "GCA_003709565.1", "taxid": 1276757, "species_taxid": 1276757, "relation_to_type": "type", "validated": true, "ani": 79.4083, "matched_fragments": 500, "total_fragments": 1246, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus pantotrophus", "strain": "strain=DSM 2944", "accession": "GCA_003633525.1", "taxid": 82367, "species_taxid": 82367, "relation_to_type": "type", "validated": true, "ani": 79.251, "matched_fragments": 441, "total_fragments": 1246, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus zeaxanthinifaciens", "strain": "strain=ATCC 21588", "accession": "GCA_000420145.1", "taxid": 187400, "species_taxid": 187400, "relation_to_type": "type", "validated": true, "ani": 79.1971, "matched_fragments": 391, "total_fragments": 1246, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus caeni", "strain": "strain=MJ17", "accession": "GCA_016629665.1", "taxid": 657651, "species_taxid": 657651, "relation_to_type": "type", "validated": true, "ani": 79.1497, "matched_fragments": 444, "total_fragments": 1246, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus mutanolyticus", "strain": "strain=RSP-02", "accession": "GCA_003285265.1", "taxid": 1499308, "species_taxid": 1499308, "relation_to_type": "type", "validated": true, "ani": 79.0435, "matched_fragments": 408, "total_fragments": 1246, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus shandongensis", "strain": "strain=wg2", "accession": "GCA_017315735.1", "taxid": 2816048, "species_taxid": 2816048, "relation_to_type": "type", "validated": true, "ani": 78.9773, "matched_fragments": 418, "total_fragments": 1246, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus salsus", "strain": "strain=EGI L200073", "accession": "GCA_021556615.1", "taxid": 2911061, "species_taxid": 2911061, "relation_to_type": "type", "validated": true, "ani": 78.8673, "matched_fragments": 398, "total_fragments": 1246, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus lichenicola", "strain": "strain=YIM 132242", "accession": "GCA_009708075.1", "taxid": 2665644, "species_taxid": 2665644, "relation_to_type": "type", "validated": true, "ani": 78.7989, "matched_fragments": 402, "total_fragments": 1246, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phaeovulum vinaykumarii", "strain": "strain=JA123", "accession": "GCA_900217755.1", "taxid": 407234, "species_taxid": 407234, "relation_to_type": "type", "validated": true, "ani": 78.6735, "matched_fragments": 298, "total_fragments": 1246, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus salipaludis", "strain": "strain=WN007", "accession": "GCA_002287065.1", "taxid": 2032623, "species_taxid": 2032623, "relation_to_type": "type", "validated": true, "ani": 78.6648, "matched_fragments": 367, "total_fragments": 1246, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus everestensis", "strain": "strain=S8-55", "accession": "GCA_021491915.1", "taxid": 2903900, "species_taxid": 2903900, "relation_to_type": "type", "validated": true, "ani": 78.4784, "matched_fragments": 360, "total_fragments": 1246, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudogemmobacter bohemicus", "strain": "strain=Cd-10", "accession": "GCA_003290025.1", "taxid": 2250708, "species_taxid": 2250708, "relation_to_type": "type", "validated": true, "ani": 77.455, "matched_fragments": 256, "total_fragments": 1246, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_007993065.1", "gtdb_species": "s__Paracoccus aurantiacus", "ani": 100.0, "matched_fragments": 1245, "total_fragments": 1246, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Paracoccus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_011308835.1", "gtdb_species": "s__Paracoccus xiamenensis", "ani": 82.5481, "matched_fragments": 756, "total_fragments": 1246, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Paracoccus", "ani_circumscription_radius": 95.0, 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