{ "type": "genome", "identifier": "GCF_007993795.1", "organism": "Antarcticibacterium arcticum", "title": "Antarcticibacterium arcticum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "KOREA POLAR RESEARCH INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_007993795.1", "bioproject": "PRJNA224116", "biosample": "SAMN12144329", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2585771", "species_taxid": "2585771", "organism_name": "Antarcticibacterium arcticum", "infraspecific_name": "strain=PAMC 28998", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/08/13", "asm_name": "ASM799379v1", "asm_submitter": "KOREA POLAR RESEARCH INSTITUTE", "gbrs_paired_asm": "GCA_007993795.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/993/795/GCF_007993795.1_ASM799379v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3409178", "genome_size_ungapped": "3409178", "gc_percent": "40.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_007993795.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "3123", "protein_coding_gene_count": "3020", "non_coding_gene_count": "57", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-08-13", "dateModified": "2019-08-13", "datePublished": "2019-08-13", "_annotation": { "sample_count": 1, "sample_organism": [ "Antarcticibacterium arcticum" ], "sample_taxid": [ "2585771" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "0.959 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3409178", "Number of Sequences": "1", "Longest Sequences (bp)": "3409178", "N50 (bp)": "3409178", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "39.8", "Number of CDSs": "3058", "Average Protein Length": "329.7", "Coding Ratio (%)": "88.7", "Number of rRNAs": "11", "Number of tRNAs": "44", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Antarcticibacterium arcticum", "strain": "strain=PAMC 28998", "accession": "GCA_007993795.1", "taxid": 2585771, "species_taxid": 2585771, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1136, "total_fragments": 1136, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Antarcticibacterium flavum", "strain": "strain=KCTC 52984", "accession": "GCA_006159205.1", "taxid": 2058175, "species_taxid": 2058175, "relation_to_type": "type", "validated": true, "ani": 78.792, "matched_fragments": 410, "total_fragments": 1136, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gillisia limnaea", "strain": "strain=DSM 15749", "accession": "GCA_000243235.1", "taxid": 195907, "species_taxid": 195907, "relation_to_type": "type", "validated": true, "ani": 78.1862, "matched_fragments": 344, "total_fragments": 1136, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinimicrobium marinum", "strain": "strain=KCTC 12719", "accession": "GCA_014651535.1", "taxid": 680283, "species_taxid": 680283, "relation_to_type": "type", "validated": true, "ani": 77.9375, "matched_fragments": 185, "total_fragments": 1136, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gillisia marina", "strain": "strain=CBA3202", "accession": "GCA_000258765.1", "taxid": 1167637, "species_taxid": 1167637, "relation_to_type": "type", "validated": true, "ani": 77.9175, "matched_fragments": 202, "total_fragments": 1136, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gillisia hiemivivida", "strain": "strain=IC154", "accession": "GCA_007997295.1", "taxid": 291190, "species_taxid": 291190, "relation_to_type": "type", "validated": true, "ani": 77.749, "matched_fragments": 216, "total_fragments": 1136, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hanstruepera marina", "strain": "strain=NBU2968", "accession": "GCA_019880635.1", "taxid": 2873265, "species_taxid": 2873265, "relation_to_type": "type", "validated": true, "ani": 77.6379, "matched_fragments": 57, "total_fragments": 1136, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pukyongia salina", "strain": "strain=RR4-38", "accession": "GCA_002966125.1", "taxid": 2094025, "species_taxid": 2094025, "relation_to_type": "type", "validated": true, "ani": 77.5385, "matched_fragments": 53, "total_fragments": 1136, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salegentibacter tibetensis", "strain": "strain=JZCK2", "accession": "GCA_020164485.1", "taxid": 2873600, "species_taxid": 2873600, "relation_to_type": "type", "validated": true, "ani": 77.3456, "matched_fragments": 183, "total_fragments": 1136, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salegentibacter flavus", "strain": "strain=DSM 17794", "accession": "GCA_900115145.1", "taxid": 287099, "species_taxid": 287099, "relation_to_type": "type", "validated": true, "ani": 77.1149, "matched_fragments": 174, "total_fragments": 1136, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salegentibacter agarivorans", "strain": "strain=DSM 23515", "accession": "GCA_900113135.1", "taxid": 345907, "species_taxid": 345907, "relation_to_type": "type", "validated": true, "ani": 76.9879, "matched_fragments": 210, "total_fragments": 1136, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Zunongwangia atlantica", "strain": "strain=22II14-10F7", "accession": "GCA_002094855.1", "taxid": 1502297, "species_taxid": 1502297, "relation_to_type": "type", "validated": true, "ani": 76.7207, "matched_fragments": 121, "total_fragments": 1136, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gramella gaetbulicola", "strain": "strain=DSM 23082", "accession": "GCA_003054225.1", "taxid": 703340, "species_taxid": 703340, "relation_to_type": "type", "validated": true, "ani": 76.7161, "matched_fragments": 164, "total_fragments": 1136, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_007993795.1", "gtdb_species": "s__Gillisia arcticum", "ani": 100.0, "matched_fragments": 1136, "total_fragments": 1136, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Gillisia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_006159205.1", "gtdb_species": "s__Gillisia flava", "ani": 78.8646, "matched_fragments": 412, "total_fragments": 1136, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Gillisia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900104765.1", "gtdb_species": "s__Gillisia sp900104765", "ani": 78.3701, "matched_fragments": 216, "total_fragments": 1136, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Gillisia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.23", "min_intra_species_ani": "98.23", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000243235.1", "gtdb_species": "s__Gillisia limnaea", "ani": 78.1862, "matched_fragments": 344, "total_fragments": 1136, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Gillisia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014651535.1", "gtdb_species": "s__Salinimicrobium marinum", "ani": 77.9411, "matched_fragments": 186, "total_fragments": 1136, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Salinimicrobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000258765.1", "gtdb_species": "s__Gillisia marina", "ani": 77.901, "matched_fragments": 203, "total_fragments": 1136, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Gillisia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_007827275.1", "gtdb_species": "s__Gillisia sp007827275", "ani": 77.802, "matched_fragments": 241, "total_fragments": 1136, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Gillisia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_007997295.1", "gtdb_species": "s__Gillisia hiemivivida", "ani": 77.7309, "matched_fragments": 218, "total_fragments": 1136, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Gillisia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.35", "min_intra_species_ani": "95.35", "mean_intra_species_af": "0.83", "min_intra_species_af": "0.83", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_002364325.1", "gtdb_species": "s__Gillisia sp002364325", "ani": 77.7089, "matched_fragments": 168, "total_fragments": 1136, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Gillisia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000745315.1", "gtdb_species": "s__Salegentibacter sp000745315", "ani": 77.6864, "matched_fragments": 207, "total_fragments": 1136, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Salegentibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000403785.1", "gtdb_species": "s__Gillisia sp000403785", "ani": 77.5863, "matched_fragments": 193, "total_fragments": 1136, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Gillisia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003550275.1", "gtdb_species": "s__QXCW01 sp003550275", "ani": 77.2292, "matched_fragments": 56, "total_fragments": 1136, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__QXCW01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.16", "min_intra_species_ani": "98.16", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_016649785.1", "gtdb_species": "s__Gillisia sp016649785", "ani": 77.2081, "matched_fragments": 177, "total_fragments": 1136, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Gillisia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900113135.1", "gtdb_species": "s__Salegentibacter agarivorans", "ani": 76.964, "matched_fragments": 212, "total_fragments": 1136, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Salegentibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.64", "min_intra_species_ani": "95.65", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.86", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_003054225.1", "gtdb_species": "s__Gramella gaetbulicola", "ani": 76.7297, "matched_fragments": 166, "total_fragments": 1136, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Gramella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002094855.1", "gtdb_species": "s__Zunongwangia atlantica", "ani": 76.7236, "matched_fragments": 122, "total_fragments": 1136, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Zunongwangia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Antarcticibacterium", "arcticum" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }