{ "type": "genome", "identifier": "GCF_007993965.1", "organism": "Prauserella muralis", "title": "Prauserella muralis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_007993965.1", "bioproject": "PRJNA224116", "biosample": "SAMN12024937", "wgs_master": "VIVS00000000.1", "refseq_category": "na", "taxid": "588067", "species_taxid": "588067", "organism_name": "Prauserella muralis", "infraspecific_name": "strain=DSM 45305", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/08/02", "asm_name": "ASM799396v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_007993965.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/993/965/GCF_007993965.1_ASM799396v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7478408", "genome_size_ungapped": "7478408", "gc_percent": "71.000000", "replicon_count": "0", "scaffold_count": "4", "contig_count": "4", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_007993965.1-RS_2024_05_17", "annotation_date": "2024-05-17", "total_gene_count": "7414", "protein_coding_gene_count": "7271", "non_coding_gene_count": "62", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-08-02", "dateModified": "2019-08-02", "datePublished": "2019-08-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Prauserella muralis" ], "sample_taxid": [ "588067" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany: Berlin" ], "sample_host_location_id": [], "data_size": "1.996 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 2.78, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7478408", "Number of Sequences": "4", "Longest Sequences (bp)": "3172530", "N50 (bp)": "2433347", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "71.2", "Number of CDSs": "7460", "Average Protein Length": "306.9", "Coding Ratio (%)": "91.8", "Number of rRNAs": "11", "Number of tRNAs": "68", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Prauserella muralis", "strain": "strain=DSM 45305", "accession": "GCA_007993965.1", "taxid": 588067, "species_taxid": 588067, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2489, "total_fragments": 2491, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Prauserella muralis", "strain": "strain=DSM 45305", "accession": "GCA_003202285.1", "taxid": 588067, "species_taxid": 588067, "relation_to_type": "type", "validated": true, "ani": 99.9968, "matched_fragments": 2468, "total_fragments": 2491, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Prauserella cavernicola", "strain": "strain=ASG 168", "accession": "GCA_016595675.1", "taxid": 2800127, "species_taxid": 2800127, "relation_to_type": "type", "validated": true, "ani": 82.7231, "matched_fragments": 1292, "total_fragments": 2491, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis arida", "strain": "strain=CGMCC 4.5579", "accession": "GCA_900115565.1", "taxid": 587909, "species_taxid": 587909, "relation_to_type": "type", "validated": true, "ani": 81.1441, "matched_fragments": 1124, "total_fragments": 2491, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis arida", "strain": "strain=DSM 45648", "accession": "GCA_004365925.1", "taxid": 587909, "species_taxid": 587909, "relation_to_type": "type", "validated": true, "ani": 81.1293, "matched_fragments": 1142, "total_fragments": 2491, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prauserella marina", "strain": "strain=DSM 45268", "accession": "GCA_002240355.1", "taxid": 530584, "species_taxid": 530584, "relation_to_type": "type", "validated": true, "ani": 80.757, "matched_fragments": 1120, "total_fragments": 2491, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prauserella marina", "strain": "strain=DSM 45268", "accession": "GCA_003182115.1", "taxid": 530584, "species_taxid": 530584, "relation_to_type": "type", "validated": true, "ani": 80.7269, "matched_fragments": 1094, "total_fragments": 2491, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis palatopharyngis", "strain": "strain=DSM 44832", "accession": "GCA_003385185.1", "taxid": 187982, "species_taxid": 187982, "relation_to_type": "type", "validated": true, "ani": 80.6462, "matched_fragments": 1025, "total_fragments": 2491, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis thermalba", "strain": "strain=NRRL B-24845", "accession": "GCA_003385215.1", "taxid": 944492, "species_taxid": 944492, "relation_to_type": "type", "validated": true, "ani": 80.6416, "matched_fragments": 1151, "total_fragments": 2491, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis methanolica", "strain": "strain=239", "accession": "GCA_000371885.1", "taxid": 1814, "species_taxid": 1814, "relation_to_type": "type", "validated": true, "ani": 80.5253, "matched_fragments": 1150, "total_fragments": 2491, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis methanolica", "strain": "strain=239", "accession": "GCA_000739085.1", "taxid": 1814, "species_taxid": 1814, "relation_to_type": "type", "validated": true, "ani": 80.5185, "matched_fragments": 1164, "total_fragments": 2491, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prauserella rugosa", "strain": "strain=DSM 43194", "accession": "GCA_007829565.1", "taxid": 43354, "species_taxid": 43354, "relation_to_type": "type", "validated": true, "ani": 80.3657, "matched_fragments": 950, "total_fragments": 2491, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prauserella rugosa", "strain": "strain=NRRL B-2295", "accession": "GCA_000719975.1", "taxid": 43354, "species_taxid": 43354, "relation_to_type": "type", "validated": true, "ani": 80.3502, "matched_fragments": 930, "total_fragments": 2491, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prauserella aidingensis", "strain": "strain=DSM 45266", "accession": "GCA_024171865.1", "taxid": 387890, "species_taxid": 387890, "relation_to_type": 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