{ "type": "genome", "identifier": "GCF_007994225.1", "organism": "Stackebrandtia albiflava", "title": "Stackebrandtia albiflava", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_007994225.1", "bioproject": "PRJNA224116", "biosample": "SAMN02745826", "wgs_master": "VLLL00000000.1", "refseq_category": "reference genome", "taxid": "406432", "species_taxid": "406432", "organism_name": "Stackebrandtia albiflava", "infraspecific_name": "strain=DSM 45044", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/08/02", "asm_name": "ASM799422v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_007994225.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/994/225/GCF_007994225.1_ASM799422v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5549958", "genome_size_ungapped": "5546873", "gc_percent": "70.000000", "replicon_count": "0", "scaffold_count": "13", "contig_count": "13", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_007994225.1-RS_2024_04_25", "annotation_date": "2024-04-25", "total_gene_count": "5336", "protein_coding_gene_count": "5243", "non_coding_gene_count": "59", "pubmed_id": "25197443" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-08-02", "dateModified": "2019-08-02", "datePublished": "2019-08-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Stackebrandtia albiflava" ], "sample_taxid": [ "406432" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Xishuang Banna tropical rainforest, Yunnan province" ], "sample_host_location_id": [], "data_size": "1.493 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 2.78, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5549958", "Number of Sequences": "13", "Longest Sequences (bp)": "2076129", "N50 (bp)": "1687451", "Gap Ratio (%)": "0.055586", "GCcontent (%)": "70.1", "Number of CDSs": "5322", "Average Protein Length": "307.1", "Coding Ratio (%)": "88.3", "Number of rRNAs": "8", "Number of tRNAs": "58", "Number of CRISPRs": "5" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Stackebrandtia albiflava", "strain": "strain=DSM 45044", "accession": "GCA_007994225.1", "taxid": 406432, "species_taxid": 406432, "relation_to_type": "type", "validated": 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"below_threshold" }, { "organism_name": "Glycomyces artemisiae", "strain": "strain=CGMCC 4.7067", "accession": "GCA_003002955.1", "taxid": 1076443, "species_taxid": 1076443, "relation_to_type": "type", "validated": true, "ani": 77.0932, "matched_fragments": 453, "total_fragments": 1844, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Glycomyces sambucus", "strain": "strain=CGMCC 4.3147", "accession": "GCA_900102815.1", "taxid": 380244, "species_taxid": 380244, "relation_to_type": "type", "validated": true, "ani": 77.0451, "matched_fragments": 472, "total_fragments": 1844, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora echinofusca", "strain": "strain=DSM 43913", "accession": "GCA_900091445.1", "taxid": 47858, "species_taxid": 47858, "relation_to_type": "type", "validated": true, "ani": 77.036, "matched_fragments": 514, "total_fragments": 1844, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Glycomyces terrestris", "strain": "strain=YIM 121974", "accession": "GCA_003933745.1", "taxid": 2493553, "species_taxid": 2493553, "relation_to_type": "type", "validated": true, "ani": 77.003, "matched_fragments": 471, "total_fragments": 1844, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora echinospora", "strain": "strain=ATCC 15837", "accession": "GCA_002266845.1", "taxid": 1877, "species_taxid": 1877, "relation_to_type": "type", "validated": true, "ani": 76.8251, "matched_fragments": 490, "total_fragments": 1844, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Catellatospora tritici", "strain": "strain=NEAU-YM18", "accession": "GCA_019083965.1", "taxid": 2851566, "species_taxid": 2851566, "relation_to_type": "type", "validated": true, "ani": 76.6415, "matched_fragments": 514, "total_fragments": 1844, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharopolyspora flava", "strain": "strain=DSM 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