{ "type": "genome", "identifier": "GCF_007994985.1", "organism": "Metabacillus litoralis", "title": "Metabacillus litoralis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Shanghai Ocean University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_007994985.1", "bioproject": "PRJNA224116", "biosample": "SAMN12500376", "wgs_master": "VOQF00000000.1", "refseq_category": "reference genome", "taxid": "152268", "species_taxid": "152268", "organism_name": "Metabacillus litoralis", "infraspecific_name": "strain=SW-211", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/08/13", "asm_name": "ASM799498v1", "asm_submitter": "Shanghai Ocean University", "gbrs_paired_asm": "GCA_007994985.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/994/985/GCF_007994985.1_ASM799498v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4884777", "genome_size_ungapped": "4884777", "gc_percent": "34.000000", "replicon_count": "0", "scaffold_count": "75", "contig_count": "75", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_007994985.1-RS_2024_08_06", "annotation_date": "2024-08-06", "total_gene_count": "4766", "protein_coding_gene_count": "4586", "non_coding_gene_count": "125", "pubmed_id": "16166692" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-08-13", "dateModified": "2019-08-13", "datePublished": "2019-08-13", "_annotation": { "sample_count": 1, "sample_organism": [ "Metabacillus litoralis" ], "sample_taxid": [ "152268" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Yellow Sea" ], "sample_host_location_id": [], "data_size": "1.365 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4884777", "Number of Sequences": "75", "Longest Sequences (bp)": "857135", "N50 (bp)": "417976", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "33.8", "Number of CDSs": "4638", "Average Protein Length": "284.2", "Coding Ratio (%)": "80.9", "Number of rRNAs": "11", "Number of tRNAs": "106", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Metabacillus litoralis", "strain": "strain=SW-211", "accession": "GCA_007994985.1", "taxid": 152268, "species_taxid": 152268, "relation_to_type": "suspected-type", "validated": true, "ani": 100.0, "matched_fragments": 1600, "total_fragments": 1602, 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