{ "type": "genome", "identifier": "GCF_007995085.1", "organism": "Paraburkholderia azotifigens", "title": "Paraburkholderia azotifigens", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Hankyong National University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_007995085.1", "bioproject": "PRJNA224116", "biosample": "SAMN12429752", "wgs_master": "VOQS00000000.1", "refseq_category": "reference genome", "taxid": "2057004", "species_taxid": "2057004", "organism_name": "Paraburkholderia azotifigens", "infraspecific_name": "strain=NF 2-5-3", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/08/13", "asm_name": "ASM799508v1", "asm_submitter": "Hankyong National University", "gbrs_paired_asm": "GCA_007995085.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/995/085/GCF_007995085.1_ASM799508v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "9704342", "genome_size_ungapped": "9704342", "gc_percent": "62.500000", "replicon_count": "0", "scaffold_count": "5", "contig_count": "5", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_007995085.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "8781", "protein_coding_gene_count": "8432", "non_coding_gene_count": "88", "pubmed_id": "29185955" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-08-13", "dateModified": "2019-08-13", "datePublished": "2019-08-13", "_annotation": { "sample_count": 1, "sample_organism": [ "Paraburkholderia azotifigens" ], "sample_taxid": [ "2057004" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Anseoung" ], "sample_host_location_id": [], "data_size": "2.680 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "9704342", "Number of Sequences": "5", "Longest Sequences (bp)": "3707493", "N50 (bp)": "3220671", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "62.5", "Number of CDSs": "8701", "Average Protein Length": "312.6", "Coding Ratio (%)": "84.1", "Number of rRNAs": "18", "Number of tRNAs": "74", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Paraburkholderia azotifigens", "strain": "strain=NF 2-5-3", "accession": "GCA_007995085.1", "taxid": 2057004, "species_taxid": 2057004, "relation_to_type": "type", "validated": true, "ani": 100.0, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia hospita", "strain": "strain=LMG 20598", "accession": "GCA_902833685.1", "taxid": 169430, "species_taxid": 169430, "relation_to_type": "type", "validated": true, "ani": 88.0465, "matched_fragments": 2295, "total_fragments": 3232, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia hospita", "strain": "strain=LMG 20598", "accession": "GCA_900108355.1", "taxid": 169430, "species_taxid": 169430, "relation_to_type": "type", "validated": true, "ani": 88.0259, "matched_fragments": 2278, "total_fragments": 3232, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia hospita", "strain": "strain=DSM 17164", "accession": "GCA_002902965.1", "taxid": 169430, "species_taxid": 169430, "relation_to_type": "type", "validated": true, "ani": 88.0155, "matched_fragments": 2389, "total_fragments": 3232, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia terrae", "strain": "strain=NBRC 100964", "accession": "GCA_000739835.1", "taxid": 311230, "species_taxid": 311230, "relation_to_type": "type", "validated": true, "ani": 87.9662, "matched_fragments": 2179, "total_fragments": 3232, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia caribensis", "strain": "strain=DSM 13236", "accession": "GCA_002902945.1", "taxid": 75105, "species_taxid": 75105, "relation_to_type": "type", "validated": true, "ani": 87.8923, "matched_fragments": 2188, "total_fragments": 3232, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia caribensis", "strain": "strain=LMG 18531", "accession": "GCA_902833515.1", "taxid": 75105, "species_taxid": 75105, "relation_to_type": "type", "validated": true, "ani": 87.8923, "matched_fragments": 2157, "total_fragments": 3232, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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"strain=WC7.3b", "accession": "GCA_014397785.1", "taxid": 1938811, "species_taxid": 1938811, "relation_to_type": "type", "validated": true, "ani": 82.3651, "matched_fragments": 1403, "total_fragments": 3232, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia saeva", "strain": "strain=LMG 31841", "accession": "GCA_907164555.1", "taxid": 2777537, "species_taxid": 2777537, "relation_to_type": "type", "validated": true, "ani": 82.237, "matched_fragments": 1241, "total_fragments": 3232, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia kirstenboschensis", "strain": "strain=KB15", "accession": "GCA_001636975.1", "taxid": 1245436, "species_taxid": 1245436, "relation_to_type": "type", "validated": true, "ani": 81.5613, "matched_fragments": 1146, "total_fragments": 3232, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, 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