{
    "type": "genome",
    "identifier": "GCF_007995155.1",
    "organism": "Cytobacillus dafuensis",
    "title": "Cytobacillus dafuensis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Fujian Academy of Agriculture Sciences",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_007995155.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN12496244",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "1742359",
        "species_taxid": "1742359",
        "organism_name": "Cytobacillus dafuensis",
        "infraspecific_name": "strain=FJAT-25496",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/08/14",
        "asm_name": "ASM799515v1",
        "asm_submitter": "Fujian Academy of Agriculture Sciences",
        "gbrs_paired_asm": "GCA_007995155.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/995/155/GCF_007995155.1_ASM799515v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4916069",
        "genome_size_ungapped": "4916069",
        "gc_percent": "37.000000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_007995155.1-RS_2024_12_09",
        "annotation_date": "2024-12-09",
        "total_gene_count": "4682",
        "protein_coding_gene_count": "4475",
        "non_coding_gene_count": "146",
        "pubmed_id": "32382951"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-08-14",
    "dateModified": "2019-08-14",
    "datePublished": "2019-08-14",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Cytobacillus dafuensis"
        ],
        "sample_taxid": [
            "1742359"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "1.378 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4916069",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "4916069",
        "N50 (bp)": "4916069",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "36.9",
        "Number of CDSs": "4586",
        "Average Protein Length": "292.5",
        "Coding Ratio (%)": "81.8",
        "Number of rRNAs": "33",
        "Number of tRNAs": "107",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Bacillus dafuensis",
                "strain": "strain=FJAT-25496",
                "accession": "GCA_007995155.1",
                "taxid": 1742359,
                "species_taxid": 1742359,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1633,
                "total_fragments": 1638,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Cytobacillus depressus",
                "strain": "strain=BZ1",
                "accession": "GCA_008923245.1",
                "taxid": 1602942,
                "species_taxid": 1602942,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.6079,
                "matched_fragments": 586,
                "total_fragments": 1638,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cytobacillus solani",
                "strain": "strain=FJAT-18043",
                "accession": "GCA_001420595.1",
                "taxid": 1637975,
                "species_taxid": 1637975,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.3386,
                "matched_fragments": 565,
                "total_fragments": 1638,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cytobacillus praedii",
                "strain": "strain=FJAT-25547",
                "accession": "GCA_001439605.1",
                "taxid": 1742358,
                "species_taxid": 1742358,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.8155,
                "matched_fragments": 549,
                "total_fragments": 1638,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacillus thuringiensis",
                "strain": "strain=ATCC 10792",
                "accession": "GCA_002119445.1",
                "taxid": 1428,
                "species_taxid": 1428,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 78.8135,
                "matched_fragments": 105,
                "total_fragments": 1638,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cytobacillus firmus",
                "strain": "strain=NCTC10335",
                "accession": "GCA_900445365.1",
                "taxid": 1399,
                "species_taxid": 1399,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 78.6979,
                "matched_fragments": 267,
                "total_fragments": 1638,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cytobacillus eiseniae",
                "strain": "strain=DSM 26675",
                "accession": "GCA_017874625.1",
                "taxid": 762947,
                "species_taxid": 762947,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.358,
                "matched_fragments": 426,
                "total_fragments": 1638,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Niallia alba",
                "strain": "strain=UniB3",
                "accession": "GCA_012933555.1",
                "taxid": 2729105,
                "species_taxid": 2729105,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.303,
                "matched_fragments": 171,
                "total_fragments": 1638,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacillus aquiflavi",
                "strain": "strain=3H-10",
                "accession": "GCA_019915265.1",
                "taxid": 2672567,
                "species_taxid": 2672567,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1373,
                "matched_fragments": 139,
                "total_fragments": 1638,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacillus salipaludis",
                "strain": "strain=WN066",
                "accession": "GCA_004358205.1",
                "taxid": 2547811,
                "species_taxid": 2547811,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0115,
                "matched_fragments": 188,
                "total_fragments": 1638,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cytobacillus horneckiae",
                "strain": "strain=1P01SC",
                "accession": "GCA_002835735.1",
                "taxid": 549687,
                "species_taxid": 549687,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9754,
                "matched_fragments": 239,
                "total_fragments": 1638,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Neobacillus cucumis",
                "strain": "strain=DSM 101566",
                "accession": "GCA_016908975.1",
                "taxid": 1740721,
                "species_taxid": 1740721,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8176,
                "matched_fragments": 165,
                "total_fragments": 1638,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cytobacillus firmus",
                "strain": "strain=NBRC 15306",
                "accession": "GCA_001591465.1",
                "taxid": 1399,
                "species_taxid": 1399,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 77.6481,
                "matched_fragments": 234,
                "total_fragments": 1638,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Robertmurraya siralis",
                "strain": "strain=171544",
                "accession": "GCA_005502275.1",
                "taxid": 77777,
                "species_taxid": 77777,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.5244,
                "matched_fragments": 165,
                "total_fragments": 1638,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacillus aquiflavi",
                "strain": "strain=3H-10",
                "accession": "GCA_011008855.1",
                "taxid": 2672567,
                "species_taxid": 2672567,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3051,
                "matched_fragments": 133,
                "total_fragments": 1638,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Neobacillus niacini",
                "strain": "strain=NBRC 15566",
                "accession": "GCA_001591505.1",
                "taxid": 86668,
                "species_taxid": 86668,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 77.2893,
                "matched_fragments": 181,
                "total_fragments": 1638,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Neobacillus kokaensis",
                "strain": "strain=LOB 377",
                "accession": "GCA_014656545.1",
                "taxid": 2759023,
                "species_taxid": 2759023,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2628,
                "matched_fragments": 175,
                "total_fragments": 1638,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cytobacillus stercorigallinarum",
                "strain": "strain=Sa5YUA1",
                "accession": "GCA_014836495.1",
                "taxid": 2762240,
                "species_taxid": 2762240,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0394,
                "matched_fragments": 163,
                "total_fragments": 1638,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Fredinandcohnia onubensis",
                "strain": "strain=0911MAR22V3",
                "accession": "GCA_002734215.1",
                "taxid": 1571209,
                "species_taxid": 1571209,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0119,
                "matched_fragments": 133,
                "total_fragments": 1638,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Niallia circulans",
                "strain": "strain=NBRC 13626",
                "accession": "GCA_001591585.1",
                "taxid": 1397,
                "species_taxid": 1397,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 76.6494,
                "matched_fragments": 141,
                "total_fragments": 1638,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gottfriedia solisilvae",
                "strain": "strain=CGMCC 1.14993",
                "accession": "GCA_014640495.1",
                "taxid": 1516104,
                "species_taxid": 1516104,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.3466,
                "matched_fragments": 105,
                "total_fragments": 1638,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 4.17,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_007995155.1",
                "gtdb_species": "s__Cytobacillus dafuensis",
                "ani": 100.0,
                "matched_fragments": 1636,
                "total_fragments": 1638,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Cytobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.98",
                "min_intra_species_ani": "99.98",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCF_018343665.1",
                "gtdb_species": "s__Cytobacillus sp018343665",
                "ani": 93.119,
                "matched_fragments": 1306,
                "total_fragments": 1638,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Cytobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001274725.1",
                "gtdb_species": "s__Cytobacillus globisporus",
                "ani": 80.2361,
                "matched_fragments": 317,
                "total_fragments": 1638,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Cytobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_008923245.1",
                "gtdb_species": "s__Cytobacillus depressus",
                "ani": 79.6161,
                "matched_fragments": 585,
                "total_fragments": 1638,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Cytobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001420595.1",
                "gtdb_species": "s__Cytobacillus solani",
                "ani": 79.3658,
                "matched_fragments": 569,
                "total_fragments": 1638,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Cytobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.54",
                "min_intra_species_ani": "99.49",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_001509555.1",
                "gtdb_species": "s__Cytobacillus sp001509555",
                "ani": 79.2062,
                "matched_fragments": 600,
                "total_fragments": 1638,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Cytobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900199725.1",
                "gtdb_species": "s__Cytobacillus massiliigabonensis",
                "ani": 79.0218,
                "matched_fragments": 507,
                "total_fragments": 1638,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Cytobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_019039215.1",
                "gtdb_species": "s__Cytobacillus sp019039215",
                "ani": 78.9788,
                "matched_fragments": 511,
                "total_fragments": 1638,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Cytobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001439605.1",
                "gtdb_species": "s__Cytobacillus praedii",
                "ani": 78.8159,
                "matched_fragments": 550,
                "total_fragments": 1638,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Cytobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.20",
                "min_intra_species_ani": "99.20",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_017874625.1",
                "gtdb_species": "s__Cytobacillus eiseniae",
                "ani": 78.3768,
                "matched_fragments": 423,
                "total_fragments": 1638,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Cytobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_011008855.1",
                "gtdb_species": "s__Bacillus_BT aquiflavi",
                "ani": 77.3051,
                "matched_fragments": 133,
                "total_fragments": 1638,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Bacillus_BT",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_016765675.1",
                "gtdb_species": "s__Neobacillus sp016765675",
                "ani": 77.2574,
                "matched_fragments": 115,
                "total_fragments": 1638,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Neobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002734285.1",
                "gtdb_species": "s__Fredinandcohnia onubensis_A",
                "ani": 77.0527,
                "matched_fragments": 121,
                "total_fragments": 1638,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_L;g__Fredinandcohnia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014836495.1",
                "gtdb_species": "s__Cytobacillus sp014836495",
                "ani": 77.0394,
                "matched_fragments": 163,
                "total_fragments": 1638,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Cytobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Cytobacillus",
        "dafuensis"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}