{
    "type": "genome",
    "identifier": "GCF_007996985.1",
    "organism": "Extensimonas vulgaris",
    "title": "Extensimonas vulgaris",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "bacteria",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_007996985.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN12301942",
        "wgs_master": "VORK00000000.1",
        "refseq_category": "na",
        "taxid": "1031594",
        "species_taxid": "1031594",
        "organism_name": "Extensimonas vulgaris",
        "infraspecific_name": "strain=S4",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/08/14",
        "asm_name": "ASM799698v1",
        "asm_submitter": "bacteria",
        "gbrs_paired_asm": "GCA_007996985.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/996/985/GCF_007996985.1_ASM799698v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3095207",
        "genome_size_ungapped": "3094484",
        "gc_percent": "65.500000",
        "replicon_count": "0",
        "scaffold_count": "42",
        "contig_count": "42",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_007996985.1-RS_2024_04_03",
        "annotation_date": "2024-04-03",
        "total_gene_count": "2861",
        "protein_coding_gene_count": "2775",
        "non_coding_gene_count": "56",
        "pubmed_id": "23064351"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-08-14",
    "dateModified": "2019-08-14",
    "datePublished": "2019-08-14",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Extensimonas vulgaris"
        ],
        "sample_taxid": [
            "1031594"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China:Zhejiang Province"
        ],
        "sample_host_location_id": [],
        "data_size": "0.849 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 97.92,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3095207",
        "Number of Sequences": "42",
        "Longest Sequences (bp)": "342465",
        "N50 (bp)": "208741",
        "Gap Ratio (%)": "0.023359",
        "GCcontent (%)": "65.4",
        "Number of CDSs": "2771",
        "Average Protein Length": "334.2",
        "Coding Ratio (%)": "89.8",
        "Number of rRNAs": "1",
        "Number of tRNAs": "49",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Extensimonas vulgaris",
                "strain": "strain=S4",
                "accession": "GCA_007996985.1",
                "taxid": 1031594,
                "species_taxid": 1031594,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1009,
                "total_fragments": 1012,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Extensimonas vulgaris",
                "strain": "strain=DSM 100911",
                "accession": "GCA_003337425.1",
                "taxid": 1031594,
                "species_taxid": 1031594,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9967,
                "matched_fragments": 1008,
                "total_fragments": 1012,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Extensimonas vulgaris",
                "strain": "strain=CGMCC 1.10977",
                "accession": "GCA_007830535.1",
                "taxid": 1031594,
                "species_taxid": 1031594,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9813,
                "matched_fragments": 1008,
                "total_fragments": 1012,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Extensimonas perlucida",
                "strain": "strain=HX2-24",
                "accession": "GCA_007655255.1",
                "taxid": 2590786,
                "species_taxid": 2590786,
                "relation_to_type": "type",
                "validated": true,
                "ani": 91.2744,
                "matched_fragments": 810,
                "total_fragments": 1012,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidovorax wautersii",
                "strain": "strain=DSM 27981",
                "accession": "GCA_900113035.1",
                "taxid": 1177982,
                "species_taxid": 1177982,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.6928,
                "matched_fragments": 574,
                "total_fragments": 1012,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Hydrogenophaga crocea",
                "strain": "strain=BA0156",
                "accession": "GCA_011388215.1",
                "taxid": 2716225,
                "species_taxid": 2716225,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.2664,
                "matched_fragments": 499,
                "total_fragments": 1012,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidovorax kalamii",
                "strain": "strain=KNDSW-TSA6",
                "accession": "GCA_002245625.1",
                "taxid": 2004485,
                "species_taxid": 2004485,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.9598,
                "matched_fragments": 539,
                "total_fragments": 1012,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Verminephrobacter eiseniae",
                "strain": "strain=EF01-2",
                "accession": "GCA_000015565.1",
                "taxid": 364317,
                "species_taxid": 364317,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.599,
                "matched_fragments": 459,
                "total_fragments": 1012,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Simplicispira hankyongi",
                "strain": "strain=NY-02",
                "accession": "GCA_003570885.1",
                "taxid": 2315688,
                "species_taxid": 2315688,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.5125,
                "matched_fragments": 475,
                "total_fragments": 1012,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Variovorax beijingensis",
                "strain": "strain=502",
                "accession": "GCA_003951285.1",
                "taxid": 2496117,
                "species_taxid": 2496117,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.4923,
                "matched_fragments": 500,
                "total_fragments": 1012,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidovorax facilis",
                "strain": "strain=DSM 649",
                "accession": "GCA_023913775.1",
                "taxid": 12917,
                "species_taxid": 12917,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.4785,
                "matched_fragments": 514,
                "total_fragments": 1012,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ottowia testudinis",
                "strain": "strain=27C",
                "accession": "GCA_017498525.1",
                "taxid": 2816950,
                "species_taxid": 2816950,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.3758,
                "matched_fragments": 472,
                "total_fragments": 1012,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ramlibacter pinisoli",
                "strain": "strain=MAH-25",
                "accession": "GCA_009758015.1",
                "taxid": 2682844,
                "species_taxid": 2682844,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.9592,
                "matched_fragments": 455,
                "total_fragments": 1012,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhodoferax lacus",
                "strain": "strain=IMCC26218",
                "accession": "GCA_003415675.1",
                "taxid": 2184758,
                "species_taxid": 2184758,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3157,
                "matched_fragments": 346,
                "total_fragments": 1012,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 97.92,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_003337425.1",
                "gtdb_species": "s__Extensimonas vulgaris",
                "ani": 99.9967,
                "matched_fragments": 1008,
                "total_fragments": 1012,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Extensimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 3,
                "status": "conclusive"
            },
            {
                "accession": "GCF_007655255.1",
                "gtdb_species": "s__Extensimonas perlucida",
                "ani": 91.2807,
                "matched_fragments": 809,
                "total_fragments": 1012,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Extensimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.84",
                "min_intra_species_ani": "97.67",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_000204645.1",
                "gtdb_species": "s__Alicycliphilus denitrificans",
                "ani": 81.3087,
                "matched_fragments": 604,
                "total_fragments": 1012,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Alicycliphilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.26",
                "min_intra_species_ani": "95.80",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.76",
                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCF_000739995.1",
                "gtdb_species": "s__Giesbergeria granuli",
                "ani": 81.2708,
                "matched_fragments": 545,
                "total_fragments": 1012,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Giesbergeria",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.66",
                "min_intra_species_ani": "95.66",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_003604195.1",
                "gtdb_species": "s__Giesbergeria lacusdiani",
                "ani": 80.9665,
                "matched_fragments": 562,
                "total_fragments": 1012,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Giesbergeria",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003053545.1",
                "gtdb_species": "s__Acidovorax sp003053545",
                "ani": 80.5981,
                "matched_fragments": 577,
                "total_fragments": 1012,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Acidovorax",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.66",
                "min_intra_species_ani": "97.32",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_002176815.1",
                "gtdb_species": "s__Acidovorax sp002176815",
                "ani": 80.4159,
                "matched_fragments": 525,
                "total_fragments": 1012,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Acidovorax",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.23",
                "min_intra_species_ani": "97.20",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_001770955.1",
                "gtdb_species": "s__Giesbergeria sp001770955",
                "ani": 80.1996,
                "matched_fragments": 486,
                "total_fragments": 1012,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Giesbergeria",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.11",
                "min_intra_species_ani": "95.02",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCA_001724785.1",
                "gtdb_species": "s__Giesbergeria sp001724785",
                "ani": 80.089,
                "matched_fragments": 402,
                "total_fragments": 1012,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Giesbergeria",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_013693755.1",
                "gtdb_species": "s__Tibeticola sp013693755",
                "ani": 80.059,
                "matched_fragments": 488,
                "total_fragments": 1012,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Tibeticola",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.98",
                "min_intra_species_ani": "96.98",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_001633105.1",
                "gtdb_species": "s__Acidovorax sp001633105",
                "ani": 80.0227,
                "matched_fragments": 557,
                "total_fragments": 1012,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Acidovorax",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_011620245.1",
                "gtdb_species": "s__Acidovorax sp011620245",
                "ani": 79.938,
                "matched_fragments": 334,
                "total_fragments": 1012,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Acidovorax",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002245625.1",
                "gtdb_species": "s__Acidovorax kalamii",
                "ani": 79.9317,
                "matched_fragments": 543,
                "total_fragments": 1012,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Acidovorax",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001714725.1",
                "gtdb_species": "s__Acidovorax sp001714725",
                "ani": 79.6482,
                "matched_fragments": 507,
                "total_fragments": 1012,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Acidovorax",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003951285.1",
                "gtdb_species": "s__Variovorax beijingensis",
                "ani": 79.5037,
                "matched_fragments": 498,
                "total_fragments": 1012,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Variovorax",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.27",
                "min_intra_species_ani": "99.27",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000463015.1",
                "gtdb_species": "s__Variovorax paradoxus_E",
                "ani": 79.3348,
                "matched_fragments": 496,
                "total_fragments": 1012,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Variovorax",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.39",
                "min_intra_species_ani": "98.39",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_004363315.1",
                "gtdb_species": "s__Tepidicella xavieri",
                "ani": 79.1137,
                "matched_fragments": 343,
                "total_fragments": 1012,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Tepidicella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_013432195.1",
                "gtdb_species": "s__Tepidicella baoligensis",
                "ani": 79.113,
                "matched_fragments": 338,
                "total_fragments": 1012,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Tepidicella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_007556755.1",
                "gtdb_species": "s__Tepidimonas fonticaldi",
                "ani": 79.0597,
                "matched_fragments": 399,
                "total_fragments": 1012,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Tepidimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.94",
                "min_intra_species_ani": "97.94",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.071,
        "cell_length": 0.204,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": 48.0,
        "optimum_ph": 7.25,
        "genome_size": 3097646.0,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Extensimonas",
        "vulgaris"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}