{
    "type": "genome",
    "identifier": "GCF_007997135.1",
    "organism": "Aequorivita lipolytica",
    "title": "Aequorivita lipolytica",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Tasmania",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_007997135.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN10785581",
        "wgs_master": "VORU00000000.1",
        "refseq_category": "reference genome",
        "taxid": "153267",
        "species_taxid": "153267",
        "organism_name": "Aequorivita lipolytica",
        "infraspecific_name": "strain=Y10-2",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/08/14",
        "asm_name": "ASM799713v1",
        "asm_submitter": "University of Tasmania",
        "gbrs_paired_asm": "GCA_007997135.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/997/135/GCF_007997135.1_ASM799713v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3313221",
        "genome_size_ungapped": "3313221",
        "gc_percent": "37.500000",
        "replicon_count": "0",
        "scaffold_count": "47",
        "contig_count": "47",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_007997135.1-RS_2024_05_17",
        "annotation_date": "2024-05-17",
        "total_gene_count": "3052",
        "protein_coding_gene_count": "2991",
        "non_coding_gene_count": "41",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-08-14",
    "dateModified": "2019-08-14",
    "datePublished": "2019-08-14",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Aequorivita lipolytica"
        ],
        "sample_taxid": [
            "153267"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Antarctica:Vestfold Hills"
        ],
        "sample_host_location_id": [],
        "data_size": "0.934 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3313221",
        "Number of Sequences": "47",
        "Longest Sequences (bp)": "563544",
        "N50 (bp)": "326418",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "37.7",
        "Number of CDSs": "2964",
        "Average Protein Length": "327.5",
        "Coding Ratio (%)": "87.9",
        "Number of rRNAs": "3",
        "Number of tRNAs": "33",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Aequorivita lipolytica",
                "strain": "strain=Y10-2",
                "accession": "GCA_007997135.1",
                "taxid": 153267,
                "species_taxid": 153267,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1077,
                "total_fragments": 1080,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Aequorivita antarctica",
                "strain": "strain=SW49",
                "accession": "GCA_007997155.1",
                "taxid": 153266,
                "species_taxid": 153266,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.3985,
                "matched_fragments": 700,
                "total_fragments": 1080,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aequorivita soesokkakensis",
                "strain": "strain=RSSK-12",
                "accession": "GCA_001641085.1",
                "taxid": 1385699,
                "species_taxid": 1385699,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.0694,
                "matched_fragments": 681,
                "total_fragments": 1080,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aequorivita sublithincola",
                "strain": "strain=DSM 14238",
                "accession": "GCA_000265385.1",
                "taxid": 101385,
                "species_taxid": 101385,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.6105,
                "matched_fragments": 677,
                "total_fragments": 1080,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aequorivita aquimaris",
                "strain": "strain=D-24",
                "accession": "GCA_001573155.1",
                "taxid": 1548749,
                "species_taxid": 1548749,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.5558,
                "matched_fragments": 648,
                "total_fragments": 1080,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aequorivita iocasae",
                "strain": "strain=KX20305",
                "accession": "GCA_016757735.1",
                "taxid": 2803865,
                "species_taxid": 2803865,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.5331,
                "matched_fragments": 656,
                "total_fragments": 1080,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aequorivita vladivostokensis",
                "strain": "strain=KMM 3516",
                "accession": "GCA_000952855.1",
                "taxid": 171194,
                "species_taxid": 171194,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.1902,
                "matched_fragments": 642,
                "total_fragments": 1080,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aequorivita capsosiphonis",
                "strain": "strain=DSM 23843",
                "accession": "GCA_000429125.1",
                "taxid": 487317,
                "species_taxid": 487317,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.8859,
                "matched_fragments": 538,
                "total_fragments": 1080,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Algibacter pacificus",
                "strain": "strain=H164",
                "accession": "GCA_008033385.1",
                "taxid": 2599389,
                "species_taxid": 2599389,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.677,
                "matched_fragments": 57,
                "total_fragments": 1080,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Polaribacter cellanae",
                "strain": "strain=SM13",
                "accession": "GCA_017569185.1",
                "taxid": 2818493,
                "species_taxid": 2818493,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.199,
                "matched_fragments": 67,
                "total_fragments": 1080,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Haloflavibacter putidus",
                "strain": "strain=PLHSN227",
                "accession": "GCA_006546625.1",
                "taxid": 2576776,
                "species_taxid": 2576776,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.0749,
                "matched_fragments": 67,
                "total_fragments": 1080,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Polaribacter batillariae",
                "strain": "strain=G4M1",
                "accession": "GCA_017498485.1",
                "taxid": 2808900,
                "species_taxid": 2808900,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.9799,
                "matched_fragments": 53,
                "total_fragments": 1080,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_007997135.1",
                "gtdb_species": "s__Aequorivita lipolytica",
                "ani": 100.0,
                "matched_fragments": 1077,
                "total_fragments": 1080,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Aequorivita",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCF_900489465.1",
                "gtdb_species": "s__Aequorivita sp900489465",
                "ani": 81.6277,
                "matched_fragments": 746,
                "total_fragments": 1080,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Aequorivita",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_007997155.1",
                "gtdb_species": "s__Aequorivita antarctica",
                "ani": 81.3886,
                "matched_fragments": 701,
                "total_fragments": 1080,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Aequorivita",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.98",
                "min_intra_species_ani": "99.98",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_001641085.1",
                "gtdb_species": "s__Aequorivita soesokkakensis",
                "ani": 81.0537,
                "matched_fragments": 683,
                "total_fragments": 1080,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Aequorivita",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.26",
                "min_intra_species_ani": "97.26",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_002364215.1",
                "gtdb_species": "s__Aequorivita sp002364215",
                "ani": 80.8295,
                "matched_fragments": 676,
                "total_fragments": 1080,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Aequorivita",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.66",
                "min_intra_species_ani": "98.55",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 12,
                "status": "-"
            },
            {
                "accession": "GCF_000265385.1",
                "gtdb_species": "s__Aequorivita sublithincola",
                "ani": 80.611,
                "matched_fragments": 677,
                "total_fragments": 1080,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Aequorivita",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016649715.1",
                "gtdb_species": "s__Aequorivita sp016649715",
                "ani": 80.5687,
                "matched_fragments": 628,
                "total_fragments": 1080,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Aequorivita",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001573155.1",
                "gtdb_species": "s__Aequorivita aquimaris",
                "ani": 80.5652,
                "matched_fragments": 647,
                "total_fragments": 1080,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Aequorivita",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_016757735.1",
                "gtdb_species": "s__Aequorivita sp016757735",
                "ani": 80.5362,
                "matched_fragments": 655,
                "total_fragments": 1080,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Aequorivita",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002715485.1",
                "gtdb_species": "s__Aequorivita sp002715485",
                "ani": 80.2937,
                "matched_fragments": 583,
                "total_fragments": 1080,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Aequorivita",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.49",
                "min_intra_species_ani": "99.49",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000429125.1",
                "gtdb_species": "s__Aequorivita capsosiphonis",
                "ani": 78.9007,
                "matched_fragments": 535,
                "total_fragments": 1080,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Aequorivita",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.226,
        "cell_length": 0.601,
        "doubling_h": null,
        "growth_tmp": 20.0,
        "optimum_tmp": 29.166,
        "optimum_ph": 7.375,
        "genome_size": 3449435.383,
        "gc_content": 36.55,
        "coding_genes": 3133.333,
        "rRNA16S_genes": 2.0,
        "tRNA_genes": 36.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Aequorivita",
        "lipolytica"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}