{ "type": "genome", "identifier": "GCF_007997155.1", "organism": "Aequorivita antarctica", "title": "Aequorivita antarctica", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Tasmania", "publication": [ {} ], "properties": { "assembly_accession": "GCF_007997155.1", "bioproject": "PRJNA224116", "biosample": "SAMN10785479", "wgs_master": "VORT00000000.1", "refseq_category": "reference genome", "taxid": "153266", "species_taxid": "153266", "organism_name": "Aequorivita antarctica", "infraspecific_name": "strain=SW49", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/08/14", "asm_name": "ASM799715v1", "asm_submitter": "University of Tasmania", "gbrs_paired_asm": "GCA_007997155.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/997/155/GCF_007997155.1_ASM799715v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3844651", "genome_size_ungapped": "3844651", "gc_percent": "37.000000", "replicon_count": "0", "scaffold_count": "66", "contig_count": "66", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_007997155.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "3581", "protein_coding_gene_count": "3510", "non_coding_gene_count": "45", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-08-14", "dateModified": "2019-08-14", "datePublished": "2019-08-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Aequorivita antarctica" ], "sample_taxid": [ "153266" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Antarctica:Prydz Bay" ], "sample_host_location_id": [], "data_size": "1.086 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3844651", "Number of Sequences": "66", "Longest Sequences (bp)": "585722", "N50 (bp)": "290064", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "37.2", "Number of CDSs": "3425", "Average Protein Length": "328.1", "Coding Ratio (%)": "87.7", "Number of rRNAs": "4", "Number of tRNAs": "35", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Aequorivita antarctica", "strain": "strain=SW49", "accession": "GCA_007997155.1", "taxid": 153266, "species_taxid": 153266, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1252, "total_fragments": 1256, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Aequorivita soesokkakensis", "strain": "strain=RSSK-12", "accession": "GCA_001641085.1", "taxid": 1385699, "species_taxid": 1385699, "relation_to_type": "type", "validated": true, "ani": 81.7705, "matched_fragments": 748, "total_fragments": 1256, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aequorivita lipolytica", "strain": "strain=Y10-2", "accession": "GCA_007997135.1", "taxid": 153267, "species_taxid": 153267, "relation_to_type": "type", "validated": true, "ani": 81.3916, "matched_fragments": 714, "total_fragments": 1256, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aequorivita sublithincola", "strain": "strain=DSM 14238", "accession": "GCA_000265385.1", "taxid": 101385, "species_taxid": 101385, "relation_to_type": "type", "validated": true, "ani": 80.8372, "matched_fragments": 731, "total_fragments": 1256, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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