{ "type": "genome", "identifier": "GCF_007997225.1", "organism": "Subsaximicrobium wynnwilliamsii", "title": "Subsaximicrobium wynnwilliamsii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Tasmania", "publication": [ {} ], "properties": { "assembly_accession": "GCF_007997225.1", "bioproject": "PRJNA224116", "biosample": "SAMN10785758", "wgs_master": "VORM00000000.1", "refseq_category": "reference genome", "taxid": "291179", "species_taxid": "291179", "organism_name": "Subsaximicrobium wynnwilliamsii", "infraspecific_name": "strain=G#7(T)", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/08/14", "asm_name": "ASM799722v1", "asm_submitter": "University of Tasmania", "gbrs_paired_asm": "GCA_007997225.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/997/225/GCF_007997225.1_ASM799722v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4902167", "genome_size_ungapped": "4902167", "gc_percent": "39.000000", "replicon_count": "0", "scaffold_count": "133", "contig_count": "133", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_007997225.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "4226", "protein_coding_gene_count": "4129", "non_coding_gene_count": "46", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-08-14", "dateModified": "2019-08-14", "datePublished": "2019-08-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Subsaximicrobium wynnwilliamsii" ], "sample_taxid": [ "291179" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Antarctica:Vestfold Hills" ], "sample_host_location_id": [], "data_size": "1.379 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": 10.0, "max": 10.0 }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4902167", "Number of Sequences": "133", "Longest Sequences (bp)": "354223", "N50 (bp)": "136116", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "39.1", "Number of CDSs": "4072", "Average Protein Length": "326.4", "Coding Ratio (%)": "81.3", "Number of rRNAs": "3", "Number of tRNAs": "37", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Subsaximicrobium wynnwilliamsii", "strain": "strain=G#7(T)", "accession": "GCA_007997225.1", "taxid": 291179, "species_taxid": 291179, "relation_to_type": "type", "validated": true, "ani": 100.0, 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95, "status": "below_threshold" }, { "organism_name": "Psychroserpens luteolus", "strain": "strain=XSD401", "accession": "GCA_021032705.1", "taxid": 2855840, "species_taxid": 2855840, "relation_to_type": "type", "validated": true, "ani": 77.4023, "matched_fragments": 160, "total_fragments": 1575, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychroserpens jangbogonensis", "strain": "strain=PAMC 27130", "accession": "GCA_000797465.1", "taxid": 1484460, "species_taxid": 1484460, "relation_to_type": "type", "validated": true, "ani": 77.1812, "matched_fragments": 170, "total_fragments": 1575, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychroserpens mesophilus", "strain": "strain=JCM 13413", "accession": "GCA_000826645.1", "taxid": 325473, "species_taxid": 325473, "relation_to_type": "type", "validated": true, "ani": 77.1049, "matched_fragments": 186, "total_fragments": 1575, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gelidibacter gilvus", "strain": "strain=IC158", "accession": "GCA_004115975.1", "taxid": 59602, "species_taxid": 59602, "relation_to_type": "type", "validated": true, "ani": 77.0283, "matched_fragments": 207, "total_fragments": 1575, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gelidibacter salicanalis", "strain": "strain=IC162", "accession": "GCA_007997285.1", "taxid": 291193, "species_taxid": 291193, "relation_to_type": "type", "validated": true, "ani": 77.0145, "matched_fragments": 168, "total_fragments": 1575, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella forsetii", "strain": "strain=HL857", "accession": "GCA_013394595.1", "taxid": 2686077, "species_taxid": 2686077, "relation_to_type": "type", "validated": true, "ani": 76.9561, "matched_fragments": 180, "total_fragments": 1575, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella sediminis", "strain": "strain=DSM 28134", "accession": "GCA_003387355.1", "taxid": 1382466, "species_taxid": 1382466, "relation_to_type": "type", "validated": true, "ani": 76.8479, "matched_fragments": 104, "total_fragments": 1575, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter pectinivorans", "strain": "strain=DSM 25730", "accession": "GCA_900112595.1", "taxid": 870482, "species_taxid": 870482, "relation_to_type": "type", "validated": true, "ani": 76.8262, "matched_fragments": 101, "total_fragments": 1575, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella helgolandensis", "strain": "strain=Z963", "accession": "GCA_013404085.1", "taxid": 2697010, "species_taxid": 2697010, "relation_to_type": "type", "validated": true, "ani": 76.8039, "matched_fragments": 148, "total_fragments": 1575, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter cellanae", "strain": "strain=SM13", "accession": "GCA_017569185.1", "taxid": 2818493, "species_taxid": 2818493, "relation_to_type": "type", "validated": true, "ani": 76.7547, "matched_fragments": 74, "total_fragments": 1575, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hanstruepera marina", "strain": "strain=NBU2968", "accession": "GCA_019880635.1", "taxid": 2873265, "species_taxid": 2873265, "relation_to_type": "type", "validated": true, "ani": 76.6763, "matched_fragments": 104, "total_fragments": 1575, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyunsoonleella aquatilis", "strain": "strain=SJ7", "accession": "GCA_014270105.1", "taxid": 2762758, "species_taxid": 2762758, "relation_to_type": "type", "validated": true, "ani": 76.643, "matched_fragments": 91, "total_fragments": 1575, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella epiphytica", "strain": "strain=KCTC 12220", "accession": "GCA_014651315.1", "taxid": 262005, "species_taxid": 262005, "relation_to_type": "type", "validated": true, "ani": 76.6319, "matched_fragments": 110, "total_fragments": 1575, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hanstruepera flava", "strain": "strain=NBU2984", "accession": "GCA_023634025.1", "taxid": 2930218, "species_taxid": 2930218, "relation_to_type": "type", "validated": true, "ani": 76.4834, "matched_fragments": 116, "total_fragments": 1575, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter amylolyticus", "strain": "strain=RU-4-M-4", "accession": "GCA_007559325.1", "taxid": 1608400, "species_taxid": 1608400, "relation_to_type": "type", "validated": true, "ani": 76.466, "matched_fragments": 114, "total_fragments": 1575, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Yeosuana aromativorans", "strain": "strain=JCM 12862", "accession": "GCA_014646655.1", "taxid": 288019, "species_taxid": 288019, "relation_to_type": "type", "validated": true, "ani": 76.46, "matched_fragments": 117, "total_fragments": 1575, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tamlana crocina", "strain": "strain=HST1-43", "accession": "GCA_012037625.1", "taxid": 393006, "species_taxid": 393006, "relation_to_type": "type", "validated": true, "ani": 76.4576, "matched_fragments": 123, "total_fragments": 1575, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter amylolyticus", "strain": "strain=RU-4-M-4", "accession": "GCA_008630605.1", "taxid": 1608400, "species_taxid": 1608400, "relation_to_type": "type", "validated": true, "ani": 76.4491, "matched_fragments": 115, "total_fragments": 1575, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter amylolyticus", "strain": "strain=DSM 29199", "accession": "GCA_014202225.1", "taxid": 1608400, "species_taxid": 1608400, "relation_to_type": "type", "validated": true, "ani": 76.4463, "matched_fragments": 117, "total_fragments": 1575, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hanstruepera neustonica", "strain": "strain=JCM19743", "accession": "GCA_002895005.1", "taxid": 1445657, "species_taxid": 1445657, "relation_to_type": "type", "validated": true, "ani": 76.4232, "matched_fragments": 96, "total_fragments": 1575, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_007997225.1", "gtdb_species": "s__Subsaximicrobium wynnwilliamsii", "ani": 100.0, "matched_fragments": 1572, "total_fragments": 1575, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Subsaximicrobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": 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