{ "type": "genome", "identifier": "GCF_007997285.1", "organism": "Gelidibacter salicanalis", "title": "Gelidibacter salicanalis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Tasmania", "publication": [ {} ], "properties": { "assembly_accession": "GCF_007997285.1", "bioproject": "PRJNA224116", "biosample": "SAMN10790396", "wgs_master": "VORX00000000.1", "refseq_category": "reference genome", "taxid": "291193", "species_taxid": "291193", "organism_name": "Gelidibacter salicanalis", "infraspecific_name": "strain=IC162", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/08/14", "asm_name": "ASM799728v1", "asm_submitter": "University of Tasmania", "gbrs_paired_asm": "GCA_007997285.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/997/285/GCF_007997285.1_ASM799728v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3788131", "genome_size_ungapped": "3788131", "gc_percent": "38.000000", "replicon_count": "0", "scaffold_count": "26", "contig_count": "26", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_007997285.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "3267", "protein_coding_gene_count": "3198", "non_coding_gene_count": "51", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-08-14", "dateModified": "2019-08-14", "datePublished": "2019-08-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Gelidibacter salicanalis" ], "sample_taxid": [ "291193" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Antarctica:Vestfold Hills" ], "sample_host_location_id": [], "data_size": "1.072 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": 5.0, "max": 5.0 }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3788131", "Number of Sequences": "26", "Longest Sequences (bp)": "737818", "N50 (bp)": "706429", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "37.9", "Number of CDSs": "3191", "Average Protein Length": "341.5", "Coding Ratio (%)": "86.3", "Number of rRNAs": "4", "Number of tRNAs": "36", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Gelidibacter salicanalis", "strain": "strain=IC162", "accession": "GCA_007997285.1", "taxid": 291193, "species_taxid": 291193, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1250, "total_fragments": 1251, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Gelidibacter sediminis", "strain": "strain=DSM 28135", "accession": "GCA_004364975.1", "taxid": 1608710, "species_taxid": 1608710, "relation_to_type": "type", "validated": true, "ani": 83.3101, "matched_fragments": 791, "total_fragments": 1251, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gelidibacter algens", "strain": "strain=DSM 12408", "accession": "GCA_003259265.1", "taxid": 49280, "species_taxid": 49280, "relation_to_type": "type", "validated": true, "ani": 79.9184, "matched_fragments": 597, "total_fragments": 1251, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gelidibacter algens", "strain": "strain=ACAM 536", "accession": "GCA_001678675.1", "taxid": 49280, "species_taxid": 49280, "relation_to_type": "type", "validated": true, "ani": 79.8735, "matched_fragments": 590, "total_fragments": 1251, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gelidibacter 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"GCA_010725055.1", "taxid": 1962232, "species_taxid": 1962232, "relation_to_type": "type", "validated": true, "ani": 78.7281, "matched_fragments": 500, "total_fragments": 1251, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mariniflexile fucanivorans", "strain": "strain=DSM 18792", "accession": "GCA_004341235.1", "taxid": 264023, "species_taxid": 264023, "relation_to_type": "type", "validated": true, "ani": 77.0045, "matched_fragments": 183, "total_fragments": 1251, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Subsaximicrobium wynnwilliamsii", "strain": "strain=G#7(T)", "accession": "GCA_007997225.1", "taxid": 291179, "species_taxid": 291179, "relation_to_type": "type", "validated": true, "ani": 76.7423, "matched_fragments": 177, "total_fragments": 1251, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyunsoonleella flava", "strain": "strain=T58", "accession": "GCA_004310325.1", "taxid": 2527939, 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"ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016469035.1", "gtdb_species": "s__Gelidibacter salicanalis_A", "ani": 82.6519, "matched_fragments": 854, "total_fragments": 1251, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Gelidibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001678675.1", "gtdb_species": "s__Gelidibacter algens", "ani": 79.8598, "matched_fragments": 592, "total_fragments": 1251, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Gelidibacter", "ani_circumscription_radius": 95.0, 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