{ "type": "genome", "identifier": "GCF_007997305.1", "organism": "Psychrobacter frigidicola", "title": "Psychrobacter frigidicola", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Tasmania", "publication": [ {} ], "properties": { "assembly_accession": "GCF_007997305.1", "bioproject": "PRJNA224116", "biosample": "SAMN10790460", "wgs_master": "VORZ00000000.1", "refseq_category": "reference genome", "taxid": "45611", "species_taxid": "45611", "organism_name": "Psychrobacter frigidicola", "infraspecific_name": "strain=ACAM 304", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/08/14", "asm_name": "ASM799730v1", "asm_submitter": "University of Tasmania", "gbrs_paired_asm": "GCA_007997305.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/997/305/GCF_007997305.1_ASM799730v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2846672", "genome_size_ungapped": "2846672", "gc_percent": "42.000000", "replicon_count": "0", "scaffold_count": "8", "contig_count": "8", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_007997305.1-RS_2024_03_29", "annotation_date": "2024-03-29", "total_gene_count": "2429", "protein_coding_gene_count": "2343", "non_coding_gene_count": "53", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-08-14", "dateModified": "2019-08-14", "datePublished": "2019-08-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Psychrobacter frigidicola" ], "sample_taxid": [ "45611" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Antarctica:Vestfold Hills" ], "sample_host_location_id": [], "data_size": "0.810 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": 10.0, "max": 10.0 }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2846672", "Number of Sequences": "8", "Longest Sequences (bp)": "1603164", "N50 (bp)": "1603164", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "42.1", "Number of CDSs": "2395", "Average Protein Length": "326.9", "Coding Ratio (%)": "82.5", "Number of rRNAs": "6", "Number of tRNAs": "42", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Psychrobacter frigidicola", "strain": "strain=ACAM 304", "accession": "GCA_007997305.1", "taxid": 45611, "species_taxid": 45611, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 945, "total_fragments": 945, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Psychrobacter arcticus", "strain": "strain=273-4", "accession": "GCA_000012305.1", "taxid": 334543, "species_taxid": 334543, "relation_to_type": "type", "validated": true, "ani": 79.4098, "matched_fragments": 404, "total_fragments": 945, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychrobacter luti", "strain": "strain=CECT 5885", "accession": "GCA_014192115.1", "taxid": 198481, "species_taxid": 198481, "relation_to_type": "type", "validated": true, "ani": 79.3248, "matched_fragments": 439, "total_fragments": 945, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychrobacter cryohalolentis", "strain": "strain=K5", "accession": "GCA_000013905.1", "taxid": 330922, "species_taxid": 330922, "relation_to_type": "type", "validated": true, "ani": 79.1545, "matched_fragments": 430, "total_fragments": 945, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychrobacter faecalis", "strain": "strain=DSM 14664", "accession": "GCA_016107575.1", "taxid": 180588, "species_taxid": 180588, "relation_to_type": "type", "validated": true, "ani": 79.0631, "matched_fragments": 427, "total_fragments": 945, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychrobacter immobilis", "strain": "strain=DSM 7229", "accession": "GCA_003148585.1", "taxid": 498, "species_taxid": 498, "relation_to_type": "suspected-type", "validated": true, "ani": 78.9793, "matched_fragments": 430, "total_fragments": 945, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychrobacter aquaticus", "strain": "strain=CMS 56", "accession": "GCA_000471625.1", "taxid": 248452, "species_taxid": 248452, "relation_to_type": "type", "validated": true, "ani": 78.9712, "matched_fragments": 394, "total_fragments": 945, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychrobacter aquimaris", "strain": "strain=DSM 16329", "accession": "GCA_016107525.1", "taxid": 292733, "species_taxid": 292733, "relation_to_type": "type", "validated": true, "ani": 78.959, "matched_fragments": 433, "total_fragments": 945, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychrobacter communis", "strain": "strain=Sa4CVA2", "accession": "GCA_014836505.1", "taxid": 2762238, "species_taxid": 2762238, "relation_to_type": "type", "validated": true, "ani": 78.9039, "matched_fragments": 410, "total_fragments": 945, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychrobacter glaciei", "strain": "strain=KCTC 42280", "accession": "GCA_014652895.1", "taxid": 619771, "species_taxid": 619771, "relation_to_type": "type", "validated": true, "ani": 78.9025, "matched_fragments": 425, "total_fragments": 945, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychrobacter cibarius", "strain": "strain=DSM 16327", "accession": "GCA_016107535.1", "taxid": 282669, "species_taxid": 282669, "relation_to_type": "type", "validated": true, "ani": 78.838, "matched_fragments": 448, "total_fragments": 945, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychrobacter namhaensis", "strain": "strain=DSM 16330", "accession": "GCA_016107545.1", "taxid": 292734, "species_taxid": 292734, "relation_to_type": "type", "validated": true, "ani": 78.5839, "matched_fragments": 363, "total_fragments": 945, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychrobacter halodurans", "strain": "strain=F2608", "accession": "GCA_017498075.1", "taxid": 2818439, "species_taxid": 2818439, "relation_to_type": "type", "validated": true, "ani": 78.4836, "matched_fragments": 316, "total_fragments": 945, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_007997305.1", "gtdb_species": "s__Psychrobacter frigidicola", "ani": 100.0, "matched_fragments": 945, "total_fragments": 945, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Psychrobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_904846675.1", "gtdb_species": "s__Psychrobacter urativorans_B", "ani": 82.3125, "matched_fragments": 699, "total_fragments": 945, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Psychrobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.89", "min_intra_species_ani": "97.89", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001298525.1", "gtdb_species": "s__Psychrobacter urativorans_A", "ani": 81.1073, "matched_fragments": 629, "total_fragments": 945, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Psychrobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014119005.1", "gtdb_species": "s__Psychrobacter sp014119005", "ani": 80.4476, "matched_fragments": 559, "total_fragments": 945, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Psychrobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_017875835.1", "gtdb_species": "s__Psychrobacter sp017875835", "ani": 79.8561, "matched_fragments": 514, "total_fragments": 945, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Psychrobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900168255.1", "gtdb_species": "s__Psychrobacter sp900168255", "ani": 79.8312, "matched_fragments": 497, "total_fragments": 945, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Psychrobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.48", "min_intra_species_ani": "96.48", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_904846605.1", "gtdb_species": "s__Psychrobacter sp904846605", "ani": 79.7781, "matched_fragments": 540, "total_fragments": 945, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Psychrobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_904846175.1", "gtdb_species": "s__Psychrobacter immobilis_E", "ani": 79.4462, "matched_fragments": 441, "total_fragments": 945, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Psychrobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014192115.1", "gtdb_species": "s__Psychrobacter luti", "ani": 79.3248, "matched_fragments": 439, "total_fragments": 945, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Psychrobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_008369115.1", "gtdb_species": "s__Psychrobacter sp008369115", "ani": 79.2539, "matched_fragments": 451, "total_fragments": 945, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Psychrobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013248965.1", "gtdb_species": "s__Psychrobacter okhotskensis", "ani": 79.0799, "matched_fragments": 416, "total_fragments": 945, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Psychrobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.29", "min_intra_species_ani": "97.15", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.85", "num_clustered_genomes": 12, "status": "-" }, { "accession": "GCF_014861365.1", "gtdb_species": "s__Psychrobacter sp014861365", "ani": 78.8452, "matched_fragments": 431, "total_fragments": 945, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Psychrobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.77", "min_intra_species_ani": "98.77", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.85", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001921745.1", "gtdb_species": "s__Psychrobacter sp001921745", "ani": 78.3475, "matched_fragments": 397, "total_fragments": 945, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Psychrobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.15", "min_intra_species_ani": "99.15", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.97", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": 0.176, "cell_length": 0.148, "doubling_h": 0.331, "growth_tmp": 12.0, "optimum_tmp": 27.22, "optimum_ph": 7.222, "genome_size": 3154087.83, "gc_content": 42.3, "coding_genes": 2421.833, "rRNA16S_genes": 4.875, "tRNA_genes": 50.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": 1.0, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 0.333, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.666, "bacillus_cell_shape": 0.235, "coccus_cell_shape": 0.294, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.47, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Psychrobacter", "frigidicola" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }