{
    "type": "genome",
    "identifier": "GCF_008000835.1",
    "organism": "Malaciobacter canalis",
    "title": "Malaciobacter canalis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "USDA, ARS, WRRC",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_008000835.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN12421742",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "1912871",
        "species_taxid": "1912871",
        "organism_name": "Malaciobacter canalis",
        "infraspecific_name": "strain=LMG 29148",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/08/17",
        "asm_name": "ASM800083v1",
        "asm_submitter": "USDA, ARS, WRRC",
        "gbrs_paired_asm": "GCA_008000835.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/008/000/835/GCF_008000835.1_ASM800083v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2829476",
        "genome_size_ungapped": "2829476",
        "gc_percent": "27.500000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_008000835.1-RS_2024_03_22",
        "annotation_date": "2024-03-22",
        "total_gene_count": "2807",
        "protein_coding_gene_count": "2723",
        "non_coding_gene_count": "83",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-08-17",
    "dateModified": "2019-08-17",
    "datePublished": "2019-08-17",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Malaciobacter canalis"
        ],
        "sample_taxid": [
            "1912871"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Spain: Catalonia"
        ],
        "sample_host_location_id": [],
        "data_size": "0.752 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2829476",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "2829476",
        "N50 (bp)": "2829476",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "27.5",
        "Number of CDSs": "2735",
        "Average Protein Length": "319.4",
        "Coding Ratio (%)": "92.6",
        "Number of rRNAs": "12",
        "Number of tRNAs": "63",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Malaciobacter canalis",
                "strain": "strain=LMG 29148",
                "accession": "GCA_008000835.1",
                "taxid": 1912871,
                "species_taxid": 1912871,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 938,
                "total_fragments": 943,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Malaciobacter canalis",
                "strain": "strain=F138-33",
                "accession": "GCA_002723485.1",
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                "species_taxid": 1912871,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9864,
                "matched_fragments": 902,
                "total_fragments": 943,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Malaciobacter marinus",
                "strain": "strain=JCM 15502",
                "accession": "GCA_003544855.1",
                "taxid": 505249,
                "species_taxid": 505249,
                "relation_to_type": "type",
                "validated": true,
                "ani": 95.5232,
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                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Malaciobacter halophilus",
                "strain": "strain=DSM 18005",
                "accession": "GCA_002837275.1",
                "taxid": 197482,
                "species_taxid": 197482,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.0602,
                "matched_fragments": 717,
                "total_fragments": 943,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Malaciobacter mytili",
                "strain": "strain=LMG 24559",
                "accession": "GCA_003346775.1",
                "taxid": 603050,
                "species_taxid": 603050,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.5641,
                "matched_fragments": 647,
                "total_fragments": 943,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Malaciobacter molluscorum",
                "strain": "strain=CECT 7696",
                "accession": "GCA_003544935.1",
                "taxid": 1032072,
                "species_taxid": 1032072,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.2984,
                "matched_fragments": 618,
                "total_fragments": 943,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Malaciobacter molluscorum",
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                "accession": "GCA_002701265.1",
                "taxid": 1032072,
                "species_taxid": 1032072,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.9495,
                "matched_fragments": 604,
                "total_fragments": 943,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_003544855.1",
                "gtdb_species": "s__Malaciobacter marinus",
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                "matched_fragments": 832,
                "total_fragments": 943,
                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Malaciobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.03",
                "min_intra_species_ani": "95.41",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 14,
                "status": "conclusive"
            },
            {
                "accession": "GCF_002837275.1",
                "gtdb_species": "s__Malaciobacter halophilus",
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                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Malaciobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_003346775.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Malaciobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.45",
                "min_intra_species_ani": "98.91",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_004116495.1",
                "gtdb_species": "s__Malaciobacter sp004116495",
                "ani": 82.3705,
                "matched_fragments": 598,
                "total_fragments": 943,
                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Malaciobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003544935.1",
                "gtdb_species": "s__Malaciobacter molluscorum",
                "ani": 82.3619,
                "matched_fragments": 617,
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                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Malaciobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.44",
                "min_intra_species_ani": "98.88",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_004116725.1",
                "gtdb_species": "s__Malaciobacter sp004116725",
                "ani": 82.2305,
                "matched_fragments": 594,
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                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Malaciobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
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        "genome_size": null,
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        "coding_genes": null,
        "rRNA16S_genes": null,
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        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Malaciobacter",
        "canalis"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}