{ "type": "genome", "identifier": "GCF_008014675.1", "organism": "Neolewinella aurantiaca", "title": "Neolewinella aurantiaca", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Dongguk university", "publication": [ {} ], "properties": { "assembly_accession": "GCF_008014675.1", "bioproject": "PRJNA224116", "biosample": "SAMN12541751", "wgs_master": "VOXD00000000.1", "refseq_category": "reference genome", "taxid": "2602767", "species_taxid": "2602767", "organism_name": "Neolewinella aurantiaca", "infraspecific_name": "strain=SSH13", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/08/18", "asm_name": "ASM801467v1", "asm_submitter": "Dongguk university", "gbrs_paired_asm": "GCA_008014675.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/008/014/675/GCF_008014675.1_ASM801467v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5995659", "genome_size_ungapped": "5994398", "gc_percent": "53.000000", "replicon_count": "0", "scaffold_count": "104", "contig_count": "104", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_008014675.1-RS_2024_11_26", "annotation_date": "2024-11-26", "total_gene_count": "4479", "protein_coding_gene_count": "4387", "non_coding_gene_count": "53", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-08-18", "dateModified": "2019-08-18", "datePublished": "2019-08-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Neolewinella aurantiaca" ], "sample_taxid": [ "2602767" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "1.710 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5995659", "Number of Sequences": "104", "Longest Sequences (bp)": "314765", "N50 (bp)": "143508", "Gap Ratio (%)": "0.021132", "GCcontent (%)": "52.8", "Number of CDSs": "4390", "Average Protein Length": "379.4", "Coding Ratio (%)": "83.3", "Number of rRNAs": "3", "Number of tRNAs": "49", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Neolewinella aurantiaca", "strain": "strain=SSH13", "accession": "GCA_008014675.1", "taxid": 2602767, "species_taxid": 2602767, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1941, "total_fragments": 1944, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Neolewinella agarilytica", "strain": "strain=DSM 24740", "accession": "GCA_900110645.1", "taxid": 478744, "species_taxid": 478744, "relation_to_type": "type", "validated": true, "ani": 78.0747, "matched_fragments": 361, "total_fragments": 1944, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neolewinella persica", "strain": "strain=DSM 23188", "accession": "GCA_000373105.1", "taxid": 70998, "species_taxid": 70998, "relation_to_type": "type", "validated": true, "ani": 77.5985, "matched_fragments": 376, "total_fragments": 1944, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neolewinella lacunae", "strain": "strain=KCTC 42187", "accession": "GCA_014349155.1", "taxid": 1517758, "species_taxid": 1517758, "relation_to_type": "type", "validated": true, "ani": 76.7647, "matched_fragments": 288, "total_fragments": 1944, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neolewinella marina", "strain": "strain=MKG-38", "accession": "GCA_002631205.1", "taxid": 438751, "species_taxid": 438751, "relation_to_type": "type", "validated": true, "ani": 76.5689, "matched_fragments": 179, "total_fragments": 1944, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neolewinella antarctica", "strain": "strain=DSM 105096", "accession": "GCA_011927835.1", "taxid": 442734, "species_taxid": 442734, "relation_to_type": "type", "validated": true, "ani": 76.2395, "matched_fragments": 183, "total_fragments": 1944, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neolewinella xylanilytica", "strain": "strain=DSM 29526", "accession": "GCA_002934605.1", "taxid": 1514080, "species_taxid": 1514080, "relation_to_type": "type", "validated": true, "ani": 76.2086, "matched_fragments": 128, "total_fragments": 1944, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, 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"optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Neolewinella", "aurantiaca" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }