{ "type": "genome", "identifier": "GCF_008016795.1", "organism": "Prevotella brunnea", "title": "Prevotella brunnea", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Tuebingen University Hospital", "publication": [ {} ], "properties": { "assembly_accession": "GCF_008016795.1", "bioproject": "PRJNA224116", "biosample": "SAMN10793699", "wgs_master": "SDIK00000000.1", "refseq_category": "reference genome", "taxid": "2508867", "species_taxid": "2508867", "organism_name": "Prevotella brunnea", "infraspecific_name": "strain=A2672", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/08/19", "asm_name": "ASM801679v1", "asm_submitter": "Tuebingen University Hospital", "gbrs_paired_asm": "GCA_008016795.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/008/016/795/GCF_008016795.1_ASM801679v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2585079", "genome_size_ungapped": "2585079", "gc_percent": "44.000000", "replicon_count": "0", "scaffold_count": "114", "contig_count": "114", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_008016795.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "2242", "protein_coding_gene_count": "2112", "non_coding_gene_count": "58", "pubmed_id": "31644420" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-08-19", "dateModified": "2019-08-19", "datePublished": "2019-08-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Prevotella brunnea" ], "sample_taxid": [ "2508867" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany" ], "sample_host_location_id": [], "data_size": "0.742 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2585079", "Number of Sequences": "114", "Longest Sequences (bp)": "96004", "N50 (bp)": "41853", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "44.0", "Number of CDSs": "2041", "Average Protein Length": "347.3", "Coding Ratio (%)": "82.3", "Number of rRNAs": "3", "Number of tRNAs": "51", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Prevotella brunnea", "strain": "strain=A2672", "accession": "GCA_008016795.1", "taxid": 2508867, "species_taxid": 2508867, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 794, "total_fragments": 802, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Prevotella corporis", "strain": "strain=JCM 8529", "accession": "GCA_000613365.1", "taxid": 28128, "species_taxid": 28128, "relation_to_type": "type", "validated": true, "ani": 84.9342, "matched_fragments": 337, "total_fragments": 802, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella corporis", "strain": "strain=DSM 18810", "accession": "GCA_000430525.1", "taxid": 28128, "species_taxid": 28128, "relation_to_type": "type", "validated": true, "ani": 84.7532, "matched_fragments": 340, "total_fragments": 802, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella disiens", "strain": "strain=NCTC11157", "accession": "GCA_900454955.1", "taxid": 28130, "species_taxid": 28130, "relation_to_type": "type", "validated": true, "ani": 83.0693, "matched_fragments": 170, "total_fragments": 802, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella pallens", "strain": "strain=DSM 18710", "accession": "GCA_003269195.1", "taxid": 60133, "species_taxid": 60133, "relation_to_type": "type", "validated": true, "ani": 81.277, "matched_fragments": 108, "total_fragments": 802, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella pallens", "strain": "strain=ATCC 700821", "accession": "GCA_000220255.1", "taxid": 60133, "species_taxid": 60133, "relation_to_type": "type", "validated": true, "ani": 81.2173, "matched_fragments": 116, "total_fragments": 802, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella ihumii", "strain": "strain=Marseille-P3385", "accession": "GCA_900155655.1", "taxid": 1917878, "species_taxid": 1917878, "relation_to_type": "type", "validated": true, "ani": 80.9913, "matched_fragments": 153, "total_fragments": 802, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella fusca", "strain": "strain=W1435", "accession": "GCA_018128145.1", "taxid": 589436, "species_taxid": 589436, "relation_to_type": "type", "validated": true, "ani": 80.792, "matched_fragments": 93, "total_fragments": 802, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella disiens", "strain": "strain=ATCC 29426", "accession": "GCA_000467875.1", "taxid": 28130, "species_taxid": 28130, "relation_to_type": "type", "validated": true, "ani": 80.7168, "matched_fragments": 133, "total_fragments": 802, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella fusca", "strain": "strain=W1435", "accession": "GCA_001262015.1", "taxid": 589436, "species_taxid": 589436, "relation_to_type": "type", "validated": true, "ani": 80.5932, "matched_fragments": 97, "total_fragments": 802, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella veroralis", "strain": "strain=DSM 19559", "accession": "GCA_000377625.1", "taxid": 28137, "species_taxid": 28137, "relation_to_type": "type", "validated": true, "ani": 80.5706, "matched_fragments": 93, "total_fragments": 802, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella fusca", "strain": "strain=JCM 17724", "accession": "GCA_000614245.1", "taxid": 589436, "species_taxid": 589436, "relation_to_type": "type", "validated": true, "ani": 80.4739, "matched_fragments": 94, "total_fragments": 802, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella melaninogenica", "strain": "strain=FDAARGOS_1566", "accession": "GCA_020735785.1", "taxid": 28132, "species_taxid": 28132, "relation_to_type": "suspected-type", "validated": true, "ani": 80.1868, "matched_fragments": 99, "total_fragments": 802, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella melaninogenica", "strain": "strain=ATCC 25845", "accession": "GCA_000144405.1", "taxid": 28132, "species_taxid": 28132, "relation_to_type": "suspected-type", "validated": true, "ani": 80.0641, "matched_fragments": 96, "total_fragments": 802, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella aurantiaca", "strain": "strain=JCM 15754", "accession": "GCA_000614025.1", "taxid": 596085, "species_taxid": 596085, "relation_to_type": "type", "validated": true, "ani": 79.9642, "matched_fragments": 107, "total_fragments": 802, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella lascolaii", "strain": "strain=khD1", "accession": "GCA_900079775.1", "taxid": 1776379, "species_taxid": 1776379, "relation_to_type": "type", "validated": true, "ani": 79.5871, "matched_fragments": 53, "total_fragments": 802, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella vespertina", "strain": "strain=A2879", "accession": "GCA_009728485.1", "taxid": 2608404, "species_taxid": 2608404, "relation_to_type": "type", "validated": true, "ani": 79.4732, "matched_fragments": 90, "total_fragments": 802, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella oris", "strain": "strain=DSM 18711", "accession": "GCA_000377685.1", "taxid": 28135, "species_taxid": 28135, "relation_to_type": "type", "validated": true, "ani": 79.239, "matched_fragments": 68, "total_fragments": 802, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella micans", "strain": "strain=JCM 16134", "accession": "GCA_000614105.1", "taxid": 189723, "species_taxid": 189723, "relation_to_type": "type", "validated": true, "ani": 78.0615, "matched_fragments": 64, "total_fragments": 802, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella micans", "strain": "strain=DSM 21469", "accession": "GCA_000373705.1", "taxid": 189723, "species_taxid": 189723, "relation_to_type": "type", "validated": true, "ani": 77.8029, "matched_fragments": 64, "total_fragments": 802, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_008016795.1", "gtdb_species": "s__Prevotella brunnea", "ani": 100.0, "matched_fragments": 794, "total_fragments": 802, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.23", "min_intra_species_ani": "99.23", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.96", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_000430525.1", "gtdb_species": "s__Prevotella corporis", "ani": 84.726, "matched_fragments": 343, "total_fragments": 802, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.63", "min_intra_species_ani": "97.78", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.87", "num_clustered_genomes": 4, "status": "-" }, { 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"s__Prevotella ihumii", "ani": 80.9887, "matched_fragments": 152, "total_fragments": 802, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001262015.1", "gtdb_species": "s__Prevotella fusca", "ani": 80.6505, "matched_fragments": 95, "total_fragments": 802, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.97", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_018127925.1", "gtdb_species": "s__Prevotella melaninogenica_C", "ani": 80.4433, "matched_fragments": 92, 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Prevotella", "brunnea" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }